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AT4G14850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase.
Computational
Description (TAIR10)
lovastatin insensitive 1 (LOI1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G09950.1); Has 35457 Blast hits to 13266 proteins in 222 species: Archae - 0; Bacteria - 4; Metazoa - 55; Fungi - 21; Plants - 34914; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK227954EMBL:AL161540
EMBL:BT010464EMBL:CP002687EMBL:Z97337EnsemblPlants:AT4G14850
EnsemblPlants:AT4G14850.1entrez:827142Gene3D:1.25.40.10GeneID:827142
Genevisible:Q0WSH6GO:GO:0000166GO:GO:0005739GO:GO:0008270
GO:GO:0016125GO:GO:0019287GO:GO:0019288GO:GO:0034046
GO:GO:0048364GO:GO:0050790Gramene:AT4G14850.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF116HOGENOM:HOG000237570InParanoid:Q0WSH6InterPro:IPR002885
InterPro:IPR011990InterPro:IPR032867iPTMnet:Q0WSH6KEGG:ath:AT4G14850
ncoils:CoilOMA:FCAFLNAPaxDb:Q0WSH6Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q0WSH6Pfscan:PS51375
PhylomeDB:Q0WSH6PIR:F71411PRIDE:Q0WSH6PRO:PR:Q0WSH6
PROSITE:PS51375ProteinModelPortal:Q0WSH6Proteomes:UP000006548RefSeq:NP_193221.3
SMR:Q0WSH6STRING:3702.AT4G14850.1TAIR:AT4G14850tair10-symbols:LOI1
tair10-symbols:MEF11TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.33233
UniProt:Q0WSH6
Coordinates (TAIR10) chr4:+:8513947..8516275
Molecular Weight (calculated) 75892.80 Da
IEP (calculated) 7.92
GRAVY (calculated) -0.05
Length 684 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLSADALG LLLKNAISAS SMRLGRVVHA RIVKTLDSPP PPFLANYLIN MYSKLDHPES ARLVLRLTPA RNVVSWTSLI SGLAQNGHFS TALVEFFEMR
101: REGVVPNDFT FPCAFKAVAS LRLPVTGKQI HALAVKCGRI LDVFVGCSAF DMYCKTRLRD DARKLFDEIP ERNLETWNAF ISNSVTDGRP REAIEAFIEF
201: RRIDGHPNSI TFCAFLNACS DWLHLNLGMQ LHGLVLRSGF DTDVSVCNGL IDFYGKCKQI RSSEIIFTEM GTKNAVSWCS LVAAYVQNHE DEKASVLYLR
301: SRKDIVETSD FMISSVLSAC AGMAGLELGR SIHAHAVKAC VERTIFVGSA LVDMYGKCGC IEDSEQAFDE MPEKNLVTRN SLIGGYAHQG QVDMALALFE
401: EMAPRGCGPT PNYMTFVSLL SACSRAGAVE NGMKIFDSMR STYGIEPGAE HYSCIVDMLG RAGMVERAYE FIKKMPIQPT ISVWGALQNA CRMHGKPQLG
501: LLAAENLFKL DPKDSGNHVL LSNTFAAAGR WAEANTVREE LKGVGIKKGA GYSWITVKNQ VHAFQAKDRS HILNKEIQTT LAKLRNEMEA AGYKPDLKLS
601: LYDLEEEEKA AEVSHHSEKL ALAFGLLSLP LSVPIRITKN LRICGDCHSF FKFVSGSVKR EIIVRDNNRF HRFKDGICSC KDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)