AT4G00690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UB-like protease 1B | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
UB-like protease 1B (ULP1B); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1373 Blast hits to 1372 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 267; Plants - 349; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:281313..283129 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40520.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.18 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||
| Length | 348 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALVPKIRNR TISDKPVSSS CTRTSSFRQR LLASCKRFLR FKLLVRASSV SLKKKAARCS QSQQVVKHND DRIEEHSSSN RGFKDGNNFL VSSTETKKLV 101: AFCGEPFQPL NEEEVALVNS ALSKRNRKKI LVSHKNSNID ISGETLQCLR PNQWLNDDVT NLYLELLKER QTRDPQKYFK CHFFNTFFYV KLVSGSGYNY 201: KAVSRWTTKR KLGYDLIDCD IIFVPIHIDI HWTLGVINNR ERKFVYLDSL FTGVGHTILN AMAKYLVDEV KQKSQKNIDV SSWGMEYVEE RPQQQNGYDC 301: GMFMLKYIDF YSRGLSLQFS QVIRDVIKKD MPYFRLRTAK EILRLRAD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)