AT4G32450.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
FP Images |
Arabidopsis cell culture (mitochondrial marker)
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G25580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr4:+:15661092..15662705 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 60540.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 537 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MIYTLTRGSL LGSTCKLRYS SLFSYLSTAA LRLGFENPTN GNPMDNSSHH IGYVNGFNGG EQSLGGFQQN SYEQSLNPVS GQNPTNRFYQ NGYNRNQSYG 101: EHSEIINQRN QNWQSSDGCS SYGTTGNGVP QENNTGGNHF QQDHSGHSSL DELDSICREG KVKKAVEIIK SWRNEGYVVD LPRLFWIAQL CGDAQALQEA 201: KVVHEFITSS VGISDISAYN SIIEMYSGCG SVEDALTVFN SMPERNLETW CGVIRCFAKN GQGEDAIDTF SRFKQEGNKP DGEMFKEIFF ACGVLGDMNE 301: GLLHFESMYK EYGIIPCMEH YVSLVKMLAE PGYLDEALRF VESMEPNVDL WETLMNLSRV HGDLILGDRC QDMVEQLDAS RLNKESKAGL VPVKSSDLVK 401: EKLQRMAKGP NYGIRYMAAG DISRPENREL YMALKSLKEH MIEIGYVPLS KLALHDVDQE SKDENLFNHN ERFAFISTFL DTPARSLIRV MKNLRVCADC 501: HNALKLMSKI VGRELISRDA KRFHHMKDGV CSCREYW |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)