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AT4G32450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At4g32450-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G25580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14666eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK175781
EMBL:AL034567EMBL:AL161581EMBL:BT015164EMBL:CP002687
EnsemblPlants:AT4G32450EnsemblPlants:AT4G32450.1entrez:829380GeneID:829380
Genevisible:Q9SUU7GO:GO:0005739GO:GO:0008270Gramene:AT4G32450.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF896HOGENOM:HOG000237569InParanoid:Q9SUU7
IntAct:Q9SUU7InterPro:IPR002885InterPro:IPR032867KEGG:ath:AT4G32450
OMA:HEFITSSPaxDb:Q9SUU7Pfam:PF01535Pfam:PF14432
Pfam:Q9SUU7Pfscan:PS51375PhylomeDB:Q9SUU7PIR:T05355
PRIDE:Q9SUU7PRO:PR:Q9SUU7PROSITE:PS51375ProteinModelPortal:Q9SUU7
Proteomes:UP000006548RefSeq:NP_194971.1SMR:Q9SUU7STRING:3702.AT4G32450.1
TAIR:AT4G32450TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.24424
UniGene:At.66647UniProt:Q9SUU7
Coordinates (TAIR10) chr4:+:15661092..15662705
Molecular Weight (calculated) 60540.60 Da
IEP (calculated) 5.86
GRAVY (calculated) -0.47
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MIYTLTRGSL LGSTCKLRYS SLFSYLSTAA LRLGFENPTN GNPMDNSSHH IGYVNGFNGG EQSLGGFQQN SYEQSLNPVS GQNPTNRFYQ NGYNRNQSYG
101: EHSEIINQRN QNWQSSDGCS SYGTTGNGVP QENNTGGNHF QQDHSGHSSL DELDSICREG KVKKAVEIIK SWRNEGYVVD LPRLFWIAQL CGDAQALQEA
201: KVVHEFITSS VGISDISAYN SIIEMYSGCG SVEDALTVFN SMPERNLETW CGVIRCFAKN GQGEDAIDTF SRFKQEGNKP DGEMFKEIFF ACGVLGDMNE
301: GLLHFESMYK EYGIIPCMEH YVSLVKMLAE PGYLDEALRF VESMEPNVDL WETLMNLSRV HGDLILGDRC QDMVEQLDAS RLNKESKAGL VPVKSSDLVK
401: EKLQRMAKGP NYGIRYMAAG DISRPENREL YMALKSLKEH MIEIGYVPLS KLALHDVDQE SKDENLFNHN ERFAFISTFL DTPARSLIRV MKNLRVCADC
501: HNALKLMSKI VGRELISRDA KRFHHMKDGV CSCREYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)