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AT4G08590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ORTHRUS-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ORTHRUS-like (ORTHL); CONTAINS InterPro DOMAIN/s: SRA-YDG (InterPro:IPR003105), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57820.2); Has 2775 Blast hits to 2701 proteins in 230 species: Archae - 0; Bacteria - 14; Metazoa - 1738; Fungi - 176; Plants - 609; Viruses - 10; Other Eukaryotes - 228 (source: NCBI BLink).
Protein Annotations
BioGrid:11720EC:6.3.2.-eggNOG:COG3440EMBL:AC002983
EMBL:AF076275EMBL:AJ608275EMBL:AK175637EMBL:AL161512
EMBL:BT022101EMBL:CP002687EnsemblPlants:AT4G08590EnsemblPlants:AT4G08590.1
entrez:826420Gene3D:2.30.280.10Gene3D:3.30.40.10GeneID:826420
Genevisible:Q681I0GO:GO:0004842GO:GO:0005634GO:GO:0005720
GO:GO:0005737GO:GO:0008270GO:GO:0008327GO:GO:0010216
GO:GO:0010424GO:GO:0010428GO:GO:0010429GO:GO:0016021
GO:GO:0016567GO:GO:0016568GO:GO:0016874GO:GO:0042393
GO:GO:0061630GO:GO:0090308hmmpanther:PTHR14140HOGENOM:HOG000240700
InParanoid:Q681I0InterPro:IPR001841InterPro:IPR003105InterPro:IPR013083
InterPro:IPR015947KEGG:ath:AT4G08590KO:K10638OMA:PPANHEQ
PaxDb:Q681I0Pfam:PF02182Pfam:PF13920Pfam:Q681I0
Pfscan:PS50089Pfscan:PS51015PhylomeDB:Q681I0PIR:T00949
PIR:T01825PRIDE:Q681I0PRO:PR:Q681I0PROSITE:PS50089
PROSITE:PS51015ProteinModelPortal:Q681I0Proteomes:UP000006548RefSeq:NP_001078357.1
RefSeq:NP_192599.2SMART:SM00184SMART:SM00466SMR:Q681I0
STRING:3702.AT4G08590.1SUPFAM:SSF57850SUPFAM:SSF88697TAIR:AT4G08590
tair10-symbols:ORL1tair10-symbols:ORTHLtair10-symbols:VIM6TMHMM:TMhelix
UniGene:At.33741UniGene:At.48832UniPathway:UPA00143UniProt:Q681I0
Coordinates (TAIR10) chr4:-:5464085..5466635
Molecular Weight (calculated) 52310.20 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.57
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRVNQLPCD CVSTAEESLT SGTCITPTHV TSLSSPLDRS GDVDPLPVSD ESGGSKADES MTDADETKKR KRILSGDCEA DENNKSDGEI ASLNDGVDAF
101: TAICEDLNCS LCNQLPDRPV TILCGHNFCL KCFDKWIDQG NQICATCRST IPDKMAANPR VNSSLVSVIR YVKVAKTAGV GTANFFPFTS NQDGPENAFR
201: TKRAKIGEEN AARIYVTVPF DHFGPIPAEH DPVRNQGVLV GESWENRVEC RQWGVHLPHV SCIAGQEDYG AQSVVISGGY KDDEDHGEWF LYTGRSRGRH
301: FANEDQEFED LNEALRVSCE MGYPVRVVRS YKDRYSAYAP KEGVRYDGVY RIEKCWRKAR FPDSFKVCRY LFVRCDNEPA PWNSDESGDR PRPLPNIPEL
401: ETASDLFERK ESPSWDFDEA EGRWRWMKPP PANHEQRERM KMAMTCLLLF VLIILVGSSS ILYQY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)