AT5G46640.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : AT hook motif DNA-binding family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT4G17950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:18924670..18926292 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40836.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 386 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSRDIPPSH NQLQPPPGML MSHYRNPNAA ASPLMVPTST SQPIQHPRLP FGNQQQSQTF HQQQQQQMDQ KTLESLGFGD GSPSSQPMRF GIDDQNQQLQ 101: VKKKRGRPRK YTPDGSIALG LAPTSPLLSA ASNSYGEGGV GDSGGNGNSV DPPVKRNRGR PPGSSKKQLD ALGGTSGVGF TPHVIEVNTG EDIASKVMAF 201: SDQGSRTICI LSASGAVSRV MLRQASHSSG IVTYEGRFEI ITLSGSVLNY EVNGSTNRSG NLSVALAGPD GGIVGGSVVG NLVAATQVQV IVGSFVAEAK 301: KPKQSSVNIA RGQNPEPASA PANMLNFGSV SQGPSSESSE ENESGSPAMH RDNNNGIYGA QQQQQQQPLH PHQMQMYQHL WSNHGQ |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)