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AT3G14000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
Curator
Summary (TAIR10)
Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.
Computational
Description (TAIR10)
ATBRXL2; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BREVIS RADIX-like 3 (TAIR:AT1G54180.2); Has 725 Blast hits to 435 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 15; Plants - 701; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioGrid:5948eggNOG:ENOG410IGAUeggNOG:ENOG4112D19EMBL:AB019229
EMBL:AK117522EMBL:BT029002EMBL:CP002686EnsemblPlants:AT3G14000
EnsemblPlants:AT3G14000.1EnsemblPlants:AT3G14000.2entrez:820614GeneID:820614
Genevisible:Q8GYL9GO:GO:0005634Gramene:AT3G14000.1Gramene:AT3G14000.2
hmmpanther:PTHR22870hmmpanther:PTHR22870:SF166HOGENOM:HOG000240563InParanoid:Q8GYL9
InterPro:IPR013591InterPro:IPR027988KEGG:ath:AT3G14000OMA:NHYCNGG
PaxDb:Q8GYL9Pfam:PF08381Pfam:PF13713Pfam:Q8GYL9
Pfscan:PS51514PhylomeDB:Q8GYL9PRIDE:Q8GYL9PRO:PR:Q8GYL9
PROSITE:PS51514Proteomes:UP000006548RefSeq:NP_188016.2RefSeq:NP_974309.1
TAIR:AT3G14000tair10-symbols:ATBRXL2tair10-symbols:BRX-LIKE2UniGene:At.39306
UniProt:Q8GYL9
Coordinates (TAIR10) chr3:-:4631170..4633353
Molecular Weight (calculated) 41865.30 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.97
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTCIACTKQ LNTNNGGSKK QEEDEEEEDR VIETPRSKQI KSLTSQIKDM AVKASGAYKS CKPCSGSSNQ NKNRSYADSD VASNSGRFRY AYKRAGSGSS
101: TPKILGKEME SRLKGFLSGE GTPESMSGRT ESTVFMEEED ELKEWVAQVE PGVLITFVSL PEGGNDMKRI RFSREMFDKW QAQKWWAENF DKVMELYNVQ
201: QFNQQSVPLP TPPRSEDGSS RIQSTKNGPA TPPLNKECSR GKGYASSGSL AHQPTTQTQS RHHDSSGLAT TPKLSSISGT KTETSSVDES ARSSFSREEE
301: EADHSGEELS VSNASDIETE WVEQDEAGVY ITIRALPDGT RELRRVRFSR EKFGETNARL WWEQNRARIQ QQYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)