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AT3G30380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G01690.1); Has 4135 Blast hits to 4125 proteins in 834 species: Archae - 12; Bacteria - 1370; Metazoa - 720; Fungi - 213; Plants - 304; Viruses - 6; Other Eukaryotes - 1510 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1073eggNOG:KOG1552EMBL:AP001314EMBL:CP002686
EnsemblPlants:AT3G30380EnsemblPlants:AT3G30380.1entrez:822739ESTHER:arath-Q9LI62
ExpressionAtlas:Q9LI62Gene3D:3.40.50.1820GeneID:822739GO:GO:0016787
Gramene:AT3G30380.1hmmpanther:PTHR12277hmmpanther:PTHR12277:SF67HOGENOM:HOG000007142
InterPro:IPR000073InterPro:IPR029058MEROPS:S09.A32OMA:CFRPSAT
Pfam:PF00561Pfam:PF12695PhylomeDB:Q9LI62Proteomes:UP000006548
RefSeq:NP_189657.1SUPFAM:SSF53474TAIR:AT3G30380UniGene:At.53597
UniProt:Q9LI62
Coordinates (TAIR10) chr3:+:11974424..11976571
Molecular Weight (calculated) 45033.10 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.40
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAVTSSMAA KFAFFPPNPP SYGVEVVEGK LRLIGVENVK ENVEVLKLKT KRGNQVVAAY IKNPTASLTL LYSHGNAADL GQMFELFSEL SLHLRVNLIG
101: YDYSGYGRSS GKPSEQNTYS DIEAVYRCLE EKYGVKEQDV ILYGQSVGSG PTLELASRLP NLRAVVLHSA IASGLRVMYP VKRTYWFDIY KNVEKISFVK
201: CPVLVIHGTS DDVVNWSHGK QLFELCKEKY EPLWIKGGNH CDLELYPQYI KHLRKFVSAI EKSPILRNGP VPLTEKARSS TDIREPARPS TDQRDKSRTS
301: TDQREMPKLS TDIARASVDK RERTRRSVDG TEKPSNSAEQ QLVQPEKGRN SIDRYISQSF YDVLMIMLLM IMYDNRFGEM IRSVGFCNID CFKPTATAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)