AT5G40550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SGF29 tudor-like domain | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1); Has 300 Blast hits to 300 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 107; Plants - 46; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16241285..16243100 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30886.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||
| Length | 273 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSPDIVGIL ENTKELDRLR KDQEEVLVEI NKMHKKLQAS PEIVEKPGDI SLAKLKNLYI QAKELSENEV TVSNILLTQL DLLLPYGPTG QQRRKLGVVA 101: EGNDQKRKRM KVDSDVIRLS PSMRNQIEAY ASLKGEQVAA RVTAESADKD EWFVVKVIHF DRETKEVEVL DEEPGDDEEG SGQRTYKLPM LCILPFPKRN 201: DPSNTQEFPP GKHVLAVYPG TTALYKATVV STPRKRKSDE YLLEFDDDEE DGALPQRTVP FHKVVALPEG HRQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)