AT1G12120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF863) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G62530.2); Has 160 Blast hits to 145 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 14; Plants - 101; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4114933..4116469 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54998.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.34 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||
| Length | 483 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYFFGLSKEE VLSQKHVVSY KETSKQNPIN MVTLFGRQVY QVKSESSPKL LKKDIDLRLP ADHYAYTNFH ETLGSEKFYS NGSSRDTVEM RFHPGHEANN 101: VKEVSATSWT GKRNPRIVID LEEPPPTWVS HRETTEHAQA SVSYVTVRNP DTKPSFFDRI SSNILMDVDQ SLVEDDSDKT TSKESSLLDL NSTPVDESVS 201: EPRYSLLQDL NCAYIEEETE TSYEKSGIDD GSTPLCSPQC QNVHEKDGTA SPASDTSCCT TENNSRIESR RSSSPRALQP SCRTRLEFTN TEDLLEENGC 301: CNEEDDSSEV IQMAAESLVH ISEISYQNQD LQSKLVLRTN SSSEDQDFPD KPEMGKAKPG CSYDSYERHT LGISETNTEE DFCVSSMALD ELNNITRDNN 401: KEIGLKLRRG RRMKNFQKEI LPSLTSLSRH EIREDMNILE AVLRSREYKK MQGKTKDVKF KANPRNKRSP PQRCVGKRRR KTE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)