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AT1G24240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L19 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19 family protein (TAIR:AT4G11630.1); Has 7931 Blast hits to 7931 proteins in 2663 species: Archae - 0; Bacteria - 5364; Metazoa - 103; Fungi - 54; Plants - 151; Viruses - 0; Other Eukaryotes - 2259 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0335eggNOG:KOG1698EMBL:AC002396EMBL:AY044318
EMBL:AY049255EMBL:AY090278EMBL:CP002684EnsemblPlants:AT1G24240
EnsemblPlants:AT1G24240.1entrez:839038GeneID:839038GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT1G24240.1hmmpanther:PTHR15680
hmmpanther:PTHR15680:SF9HOGENOM:HOG000016266InterPro:IPR001857InterPro:IPR008991
KEGG:ath:AT1G24240OMA:PEFQASIPANTHER:PTHR15680Pfam:PF01245
Pfscan:PS51257PhylomeDB:O48691PIR:T00654PRINTS:PR00061
Proteomes:UP000006548RefSeq:NP_564213.1SMR:O48691STRING:3702.AT1G24240.1
SUPFAM:SSF50104TAIR:AT1G24240TIGRfam:TIGR01024TIGRFAMs:TIGR01024
UniGene:At.33552UniGene:At.62626UniProt:O48691
Coordinates (TAIR10) chr1:+:8586431..8587970
Molecular Weight (calculated) 25069.70 Da
IEP (calculated) 11.28
GRAVY (calculated) -0.32
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MQLIRGSTRL LQRHRFSISN TLPFTSSSCG SWSANESRKL GFDSFPSTRA ATYLISSLKN AGFSSLAVVP KQNFSSRCFS TTGDSVQGSP ESDCVVPQRI
101: KFKRLDKTAK HIMQIVDKEA VEEVRTLREI PEIKPGYIVQ LKVEVPENKR RVSIVKGVVI ARRNAGLNST FRIRRLVAGV GVESMFPLYS PNLRVIKVVD
201: KKKVRRAKLY YLREKVNALK KH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)