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AT2G18400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein L6 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosomal protein L6 family protein; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G05190.1); Has 7681 Blast hits to 7681 proteins in 2698 species: Archae - 1; Bacteria - 5446; Metazoa - 4; Fungi - 120; Plants - 122; Viruses - 0; Other Eukaryotes - 1988 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0097eggNOG:KOG3254EMBL:AC006439EMBL:AY044317
EMBL:AY088468EMBL:CP002685EnsemblPlants:AT2G18400EnsemblPlants:AT2G18400.1
entrez:816355Gene3D:3.90.930.12GeneID:816355GO:GO:0003735
GO:GO:0005840GO:GO:0006412GO:GO:0019843Gramene:AT2G18400.1
hmmpanther:PTHR11655hmmpanther:PTHR11655:SF17HOGENOM:HOG000039903InterPro:IPR000702
InterPro:IPR002358InterPro:IPR019906InterPro:IPR020040KEGG:ath:AT2G18400
KO:K02933OMA:IVCCTGIPANTHER:PTHR11655Pfam:PF00347
PhylomeDB:Q9ZPX2PIR:H84563PRINTS:PR00059PROSITE:PS00525
Proteomes:UP000006548RefSeq:NP_565438.1scanprosite:PS00525SMR:Q9ZPX2
STRING:3702.AT2G18400.1SUPFAM:SSF56053TAIR:AT2G18400UniGene:At.13887
UniGene:At.63473UniProt:Q9ZPX2
Coordinates (TAIR10) chr2:-:7989665..7989973
Molecular Weight (calculated) 11590.30 Da
IEP (calculated) 10.34
GRAVY (calculated) -0.32
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK
101: SK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)