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AT5G27820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L18p/L5e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IN4MeggNOG:ENOG4111V9IEMBL:AY085957EMBL:BT024558
EMBL:CP002688EnsemblPlants:AT5G27820EnsemblPlants:AT5G27820.1entrez:832844
GeneID:832844GO:GO:0003735GO:GO:0005840GO:GO:0006412
Gramene:AT5G27820.1hmmpanther:PTHR12899hmmpanther:PTHR12899:SF6HOGENOM:HOG000248743
InterPro:IPR005484KEGG:ath:AT5G27820OMA:PYILKMHPfam:PF00861
PhylomeDB:Q8LDK5Proteomes:UP000006548RefSeq:NP_198134.1SMR:Q8LDK5
STRING:3702.AT5G27820.1SUPFAM:SSF53137TAIR:AT5G27820UniGene:At.30784
UniProt:Q8LDK5
Coordinates (TAIR10) chr5:+:9860584..9860928
Molecular Weight (calculated) 12739.90 Da
IEP (calculated) 10.60
GRAVY (calculated) -0.06
Length 114 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIPPAVRPP RLFDYLKPYV LKMHFTNKFV HAQVIHSPTA TVACSASSQE KALRETMDIT RDVAAASKIG KILGERLLMK DIPAVTIQMK KEQRYHGKVK
101: AVIDSVREAG VKLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)