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AT2G18410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.856
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At2g18410
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVDGeggNOG:ENOG4111HQXEMBL:AC006439EMBL:BX819102
EMBL:CP002685EnsemblPlants:AT2G18410EnsemblPlants:AT2G18410.1entrez:816356
GeneID:816356Genevisible:F4IQJ2GO:GO:0005634GO:GO:0005737
GO:GO:0006351GO:GO:0006355GO:GO:0016746GO:GO:0033588
hmmpanther:PTHR15641hmmpanther:PTHR15641:SF1InParanoid:F4IQJ2InterPro:IPR019519
iPTMnet:F4IQJ2KEGG:ath:AT2G18410OMA:QVSSIFWPANTHER:PTHR15641
PaxDb:F4IQJ2Pfam:F4IQJ2Pfam:PF10483PhylomeDB:F4IQJ2
PIR:A84564PRIDE:F4IQJ2PRO:PR:F4IQJ2ProteinModelPortal:F4IQJ2
Proteomes:UP000006548RefSeq:NP_001031371.1RefSeq:NP_179432.3STRING:3702.AT2G18410.1
TAIR:AT2G18410UniGene:At.40000UniProt:F4IQJ2
Coordinates (TAIR10) chr2:+:7990768..7992588
Molecular Weight (calculated) 41430.00 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.29
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESIFRKLR DGGEEGELAP ALTIEETVAS PFGLDVSGYL LTNLSSSILA GKSSSQGLVL ITFSRSPSFY LQLLKQKGIV VSSSSKWIRI LDCYTDPLGW
101: IDQSSTSFSE GSSLIKLHKC VSDLKKLFSS IIEAGRELVG TGKTRFCVAI DSVNELLRHS AMPLVSGLLT DLRSHAQISS VFWSLNTDLH QEKVTNALEY
201: ISTMKANLEP LCPSSDGQRN ALENLFSVHQ DFGKGRFHVR FKLRKGRVRV MSEEYHVDQS GINFSPISSV DTVIAATKSL LPKVQFNLQL SEKERVEKEK
301: VVLPFEHQDD GKSNEIYDGR RSLVDGKIET TPLSSMELQT DVVSSGKGGE IIYFRDSDDE HPDSDEDPDD DLDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)