AT2G18410.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.856 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
FP Images |
7-day old Arabidopsis seedling (no marker)
|
||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:+:7990768..7992588 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41430.00 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||
Length | 374 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAESIFRKLR DGGEEGELAP ALTIEETVAS PFGLDVSGYL LTNLSSSILA GKSSSQGLVL ITFSRSPSFY LQLLKQKGIV VSSSSKWIRI LDCYTDPLGW 101: IDQSSTSFSE GSSLIKLHKC VSDLKKLFSS IIEAGRELVG TGKTRFCVAI DSVNELLRHS AMPLVSGLLT DLRSHAQISS VFWSLNTDLH QEKVTNALEY 201: ISTMKANLEP LCPSSDGQRN ALENLFSVHQ DFGKGRFHVR FKLRKGRVRV MSEEYHVDQS GINFSPISSV DTVIAATKSL LPKVQFNLQL SEKERVEKEK 301: VVLPFEHQDD GKSNEIYDGR RSLVDGKIET TPLSSMELQT DVVSSGKGGE IIYFRDSDDE HPDSDEDPDD DLDI |
||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)