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AT2G44510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CDK inhibitor P21 binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CDK inhibitor P21 binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: CDK inhibitor P21 binding protein (TAIR:AT5G03830.1); Has 392 Blast hits to 392 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 138; Plants - 52; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GYVeggNOG:KOG3034EMBL:AC004521EMBL:AY045588
EMBL:AY113055EMBL:CP002685EnsemblPlants:AT2G44510EnsemblPlants:AT2G44510.1
entrez:819058GeneID:819058Genevisible:O64885GO:GO:0005730
Gramene:AT2G44510.1hmmpanther:PTHR13261HOGENOM:HOG000240567InParanoid:O64885
InterPro:IPR025602iPTMnet:O64885KEGG:ath:AT2G44510KO:K15262
OMA:MFVNAEEPANTHER:PTHR13261PaxDb:O64885Pfam:O64885
Pfam:PF13862PhylomeDB:O64885PIR:T02406PIRSF:PIRSF028983
PRIDE:O64885PRO:PR:O64885Proteomes:UP000006548RefSeq:NP_566018.1
STRING:3702.AT2G44510.1TAIR:AT2G44510UniGene:At.12665UniProt:O64885
Coordinates (TAIR10) chr2:+:18377411..18379030
Molecular Weight (calculated) 37948.30 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.59
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRRPSSGRR VLKHQPLTFS PFMRLLSFAS MARRDLSHPE DCQCSDEDIS FDEKQKIPNL PRKGKEEQVS DSSDEEDSQE DVQADFEFFD PKPTDFHGVK
101: ILLQNYLDDK EWDLSSFVDC ILEQTTVGTV VKVADDEDES VFALVTALNM ARDKDNKCFR ELKEFLRKVC SEKNIANNLE MLLEKKAQDV GLLVSQRVMN
201: LPPQLLPPLY DGLFDEVSWA IEDEPTEKLR RSFRFKSYLL VTKIYKLKNP KQRKPRHGEE DIEDTVFLKP EDELFLELSS WSFTFPMRSQ LVTSQEMKNY
301: QLMGLVMAVE ANKIPKFRQM LNSLID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)