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AT1G51380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1); Has 43039 Blast hits to 42379 proteins in 3015 species: Archae - 601; Bacteria - 21889; Metazoa - 6256; Fungi - 4531; Plants - 2596; Viruses - 24; Other Eukaryotes - 7142 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1332-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0328
EMBL:AC006085EMBL:AC024261EMBL:AY058890EMBL:AY079046
EMBL:CP002684EnsemblPlants:AT1G51380EnsemblPlants:AT1G51380.1entrez:841562
Gene3D:3.40.50.300GeneID:841562Genevisible:Q9C8J1GO:GO:0003723
GO:GO:0004386GO:GO:0005524GO:GO:0005730GO:GO:0006364
Gramene:AT1G51380.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF57HOGENOM:HOG000268797
InParanoid:Q9C8J1InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417KEGG:ath:AT1G51380KO:K13025
OMA:RHQTLFFPaxDb:Q9C8J1Pfam:PF00270Pfam:PF00271
Pfam:Q9C8J1Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195
PhylomeDB:Q9C8J1PIR:H96551PRIDE:Q9C8J1PRO:PR:Q9C8J1
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9C8J1
Proteomes:UP000006548Reactome:R-ATH-975957RefSeq:NP_175549.1SMART:SM00487
SMART:SM00490SMR:Q9C8J1STRING:3702.AT1G51380.1SUPFAM:SSF52540
TAIR:AT1G51380UniGene:At.11244UniProt:Q9C8J1
Coordinates (TAIR10) chr1:+:19047960..19049967
Molecular Weight (calculated) 44359.70 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.34
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)