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AT2G18390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.817
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADP-ribosylation factor family protein
Curator
Summary (TAIR10)
Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.
Computational
Description (TAIR10)
TITAN 5 (TTN5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1B (TAIR:AT5G14670.1); Has 10006 Blast hits to 10000 proteins in 420 species: Archae - 13; Bacteria - 39; Metazoa - 4544; Fungi - 1627; Plants - 1505; Viruses - 3; Other Eukaryotes - 2275 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRG9eggNOG:KOG0073EMBL:AC006439EMBL:AF486852
EMBL:AY035009EMBL:AY063048EMBL:AY088331EMBL:CP002685
EnsemblPlants:AT2G18390EnsemblPlants:AT2G18390.1entrez:816354Gene3D:3.40.50.300
GeneID:816354Genevisible:Q9ZPX1GO:GO:0005525GO:GO:0005737
GO:GO:0007021GO:GO:0007264GO:GO:0009558GO:GO:0009793
GO:GO:0009960Gramene:AT2G18390.1hmmpanther:PTHR11711HOGENOM:HOG000163691
InParanoid:Q9ZPX1InterPro:IPR005225InterPro:IPR006689InterPro:IPR024156
InterPro:IPR027417KEGG:ath:AT2G18390KO:K07943OMA:FEQTDAL
PaxDb:Q9ZPX1Pfam:PF00025Pfam:Q9ZPX1Pfscan:PS51417
PhylomeDB:Q9ZPX1PIR:G84563PRIDE:Q9ZPX1PRINTS:PR00328
PRO:PR:Q9ZPX1PROSITE:PS51417ProteinModelPortal:Q9ZPX1Proteomes:UP000006548
RefSeq:NP_179430.1SMR:Q9ZPX1STRING:3702.AT2G18390.1SUPFAM:SSF52540
TAIR:AT2G18390tair10-symbols:ARL2tair10-symbols:ATARLC1tair10-symbols:HAL
tair10-symbols:TTN5TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.13887
UniGene:At.63473UniProt:Q9ZPX1
Coordinates (TAIR10) chr2:+:7988335..7989374
Molecular Weight (calculated) 21078.70 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.20
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLLSIIRKI KKKEKEMRIL MVGLDNSGKT TIVLKINGED TSVISPTLGF NIKTIIYQKY TLNIWDVGGQ KTIRSYWRNY FEQTDGLVWV VDSSDLRRLD
101: DCKMELDNLL KEERLAGSSL LILANKQDIQ GALTPDEIGK VLNLESMDKS RHWKIVGCSA YTGEGLLEGF DWLVQDIASR IYMLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)