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AT4G09810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25053812 (2014): Golgi Golgi apparatus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G34020.1); Has 1601 Blast hits to 1598 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 204; Plants - 929; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AL049482EMBL:AL161515
EMBL:BT010950EMBL:CP002687EMBL:KJ667161EMBL:KP872772
EnsemblPlants:AT4G09810EnsemblPlants:AT4G09810.1entrez:826570GeneID:826570
GO:GO:0005338GO:GO:0005794GO:GO:0008643GO:GO:0015780
GO:GO:0016021GO:GO:0022857GO:GO:0055085Gramene:AT4G09810.1
hmmpanther:PTHR11132hmmpanther:PTHR11132:SF73InterPro:IPR004853InterPro:IPR031089
KEGG:ath:AT4G09810OMA:KFALCANPANTHER:PTHR11132:SF73Pfam:PF03151
PhylomeDB:Q9SZ96PIR:T04029Proteomes:UP000006548RefSeq:NP_192719.1
STRING:3702.AT4G09810.1TAIR:AT4G09810TMHMM:TMhelixUniGene:At.180
UniGene:At.33672UniProt:Q9SZ96
Coordinates (TAIR10) chr4:-:6175415..6176892
Molecular Weight (calculated) 37031.70 Da
IEP (calculated) 9.62
GRAVY (calculated) 0.49
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPVKKSDKK ATLDAAAWMF NVVTSVGIII VNKALMATYG FSFATTLTGL HFATTTLMTL VLRCLGYIQP SHLPFTELLK FILFANFSIV GMNVSLMWNS
101: VGFYQIAKLS MIPVSCLLEV VFDKIRYSRD TKLSIGLVLV GVGVCTVTDV SVNTKGFVAA FVAVWSTALQ QYYVHYLQRK YSLSSFNLLG HTAPAQAATL
201: LIVGPFLDYW LTDKRVDMYD YNSVSVMFIT LSCTIAIGTN LSQFICIGRF TAVSFQVLGH MKTILVLVMG FFFFDRDGLN LHVILGMIIA VLGMIWYGNA
301: SSKPGGKEKK NYSLPTTRQQ KLGATSDSDE HRDKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)