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AT1G53650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTC-interacting domain 8
Curator
Summary (TAIR10)
RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins.
Computational
Description (TAIR10)
CTC-interacting domain 8 (CID8); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 9 (TAIR:AT3G14450.1); Has 4564 Blast hits to 3628 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 2619; Fungi - 543; Plants - 1016; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).
Protein Annotations
BioGrid:27027eggNOG:COG0724eggNOG:KOG0118EMBL:AC024260
EMBL:AK175783EMBL:AK175969EMBL:BT014885EMBL:CP002684
EnsemblPlants:AT1G53650EnsemblPlants:AT1G53650.1EnsemblPlants:AT1G53650.2entrez:841802
ExpressionAtlas:Q9C8M0Gene3D:3.30.70.330GeneID:841802Genevisible:Q9C8M0
GO:GO:0000166GO:GO:0003723GO:GO:0005634hmmpanther:PTHR24012
HOGENOM:HOG000006309InParanoid:Q9C8M0IntAct:Q9C8M0InterPro:IPR000504
InterPro:IPR009818InterPro:IPR012677KEGG:ath:AT1G53650PaxDb:Q9C8M0
Pfam:PF00076Pfam:PF07145Pfam:Q9C8M0Pfscan:PS50102
PhylomeDB:Q9C8M0PIR:F96576PRIDE:Q9C8M0PRO:PR:Q9C8M0
PROSITE:PS50102ProteinModelPortal:Q9C8M0Proteomes:UP000006548RefSeq:NP_001031182.1
RefSeq:NP_175769.1SMART:SM00360SMR:Q9C8M0STRING:3702.AT1G53650.1
SUPFAM:SSF54928TAIR:AT1G53650tair10-symbols:CID8UniGene:At.37370
UniProt:Q9C8M0
Coordinates (TAIR10) chr1:-:20029262..20031243
Molecular Weight (calculated) 34683.90 Da
IEP (calculated) 8.02
GRAVY (calculated) -0.53
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAITEMATD SNDVINDGGT GDGIEKSTDS KPEIESDDLK PKSKPEYDQM KKLVAMFKKL NPEAKEFFPS YKRNTNQSDD FVIAIKPSGE DNKKVAINRR
101: RRNNYNQGRR VRLPGRASKA QREDSIRRTV YVSDIDQSVT EEGLAGLFSS CGQVVDCRIC GDPNSVLRFA FVEFSDDQGA RSALSLGGTM IGYYPVRVLP
201: SKTAILPVNP TFLPRSEDER EMCSRTIYCT NVDKNATEDD VNTFFQSACG EVTRLRLLGD QVHSTRIAFV EFAMAESAVA ALNCSGIVLG SQPIRVSPSK
301: TPVRSRITRS PSPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)