AT5G35700.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : fimbrin-like protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
fimbrin-like protein 2 (FIM2); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: Actin binding Calponin homology (CH) domain-containing protein (TAIR:AT2G04750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:13872833..13876432 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 76762.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.90 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 687 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSSYVGVLVS DPWLQSQFTQ VELRTLKSKF VSNKTQLGRF TVGDLPPVFE KLKAFNGTID EDEIKSVLDK SYPNADDEVD FEFFLRAFLS VQARGVEKSG 101: GSKGASSFLK TSTTTVHHAI NESEKASYVS HVNNYLRDDP FLKSYLPIDP ATNAFFDLVK DGVLLCKLIN VAVPGTIDER AINTKKTLNP WERNENLTLG 201: LNSAKAIGCT VVNIGTQDIA EGRPYLVLGL ISQIIKIQML ADLNFKKTPS LFQLVDDTQD AEELMGLAPE KVLLKWMNFH LKKAGYEKQV TNFSSDLKDG 301: EAYAYLLNAL APEHSTHVAL ETKDPTERAK KVLEQAEKLD CKRYLSPKDI VDGSANLNLA FVAQIFQHRN GLTVDDSKTS FAEMMTDDVE TSREERCFRL 401: WINSLGTATY VNNVFEDLRN GWVLLEVLDK VSPGSVNWKH ANKPPIKMPF KKVENCNEVI KIGKELRFSL VNVAGNDIVQ GNKKLLLAFL WQLMRYTMLQ 501: LLRNLRSHSQ GKEITDADIL NWANRKVKRG GRTSQADSFR DKNLSSGMFF LELLSAVEPR VVNWSLVTNG ETEEDKKLNA TYIISVARKL GCSIFLLPED 601: IIEVNQKMML ILAASIMYWS LQQQSDTEST VSEDATDDGD ANSVAGEISN LSIDGASESS PTVQDQELLT KADNDEDEVD GENNKDA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)