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AT5G35700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : fimbrin-like protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
fimbrin-like protein 2 (FIM2); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: Actin binding Calponin homology (CH) domain-containing protein (TAIR:AT2G04750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5069eggNOG:KOG0046EMBL:AB011485EMBL:AK221162
EMBL:AY045780EMBL:AY142570EMBL:CP002688EnsemblPlants:AT5G35700
EnsemblPlants:AT5G35700.1entrez:833544Gene3D:1.10.418.10GeneID:833544
Genevisible:Q9FKI0GO:GO:0005829GO:GO:0005856GO:GO:0009846
GO:GO:0009860GO:GO:0030036GO:GO:0051015Gramene:AT5G35700.1
hmmpanther:PTHR19961hmmpanther:PTHR19961:SF25HOGENOM:HOG000213447InParanoid:Q9FKI0
InterPro:IPR001589InterPro:IPR001715KEGG:ath:AT5G35700OMA:HLYADID
PaxDb:Q9FKI0Pfam:PF00307Pfam:Q9FKI0Pfscan:PS50021
PhylomeDB:Q9FKI0PRIDE:Q9FKI0PRO:PR:Q9FKI0PROSITE:PS00020
PROSITE:PS50021ProteinModelPortal:Q9FKI0Proteomes:UP000006548RefSeq:NP_198420.1
scanprosite:PS00020SMART:SM00033SMR:Q9FKI0STRING:3702.AT5G35700.1
SUPFAM:SSF47576TAIR:AT5G35700tair10-symbols:FIM2tair10-symbols:FIM5
UniGene:At.7495UniProt:Q9FKI0
Coordinates (TAIR10) chr5:-:13872833..13876432
Molecular Weight (calculated) 76762.20 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.32
Length 687 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSYVGVLVS DPWLQSQFTQ VELRTLKSKF VSNKTQLGRF TVGDLPPVFE KLKAFNGTID EDEIKSVLDK SYPNADDEVD FEFFLRAFLS VQARGVEKSG
101: GSKGASSFLK TSTTTVHHAI NESEKASYVS HVNNYLRDDP FLKSYLPIDP ATNAFFDLVK DGVLLCKLIN VAVPGTIDER AINTKKTLNP WERNENLTLG
201: LNSAKAIGCT VVNIGTQDIA EGRPYLVLGL ISQIIKIQML ADLNFKKTPS LFQLVDDTQD AEELMGLAPE KVLLKWMNFH LKKAGYEKQV TNFSSDLKDG
301: EAYAYLLNAL APEHSTHVAL ETKDPTERAK KVLEQAEKLD CKRYLSPKDI VDGSANLNLA FVAQIFQHRN GLTVDDSKTS FAEMMTDDVE TSREERCFRL
401: WINSLGTATY VNNVFEDLRN GWVLLEVLDK VSPGSVNWKH ANKPPIKMPF KKVENCNEVI KIGKELRFSL VNVAGNDIVQ GNKKLLLAFL WQLMRYTMLQ
501: LLRNLRSHSQ GKEITDADIL NWANRKVKRG GRTSQADSFR DKNLSSGMFF LELLSAVEPR VVNWSLVTNG ETEEDKKLNA TYIISVARKL GCSIFLLPED
601: IIEVNQKMML ILAASIMYWS LQQQSDTEST VSEDATDDGD ANSVAGEISN LSIDGASESS PTVQDQELLT KADNDEDEVD GENNKDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)