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AT4G22150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.687
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant UBX domain-containing protein 3
Curator
Summary (TAIR10)
Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3)
Computational
Description (TAIR10)
plant UBX domain-containing protein 3 (PUX3); INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP domain (InterPro:IPR012989); BEST Arabidopsis thaliana protein match is: plant UBX domain containing protein 4 (TAIR:AT4G04210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YGXUeggNOG:KOG2086EMBL:AK176241EMBL:AL021712
EMBL:AL161556EMBL:AY572783EMBL:BT010440EMBL:CP002687
EnsemblPlants:AT4G22150EnsemblPlants:AT4G22150.1entrez:828304GeneID:828304
Gramene:AT4G22150.1hmmpanther:PTHR23333hmmpanther:PTHR23333:SF26HOGENOM:HOG000159961
InParanoid:F4JL29InterPro:IPR001012InterPro:IPR012989InterPro:IPR029071
iPTMnet:Q9SUG6KEGG:ath:AT4G22150KO:K14012PaxDb:Q9SUG6
Pfam:PF00789Pfam:PF08059Pfscan:PS50033Pfscan:PS51399
PhylomeDB:Q9SUG6PIR:D85253PRIDE:Q9SUG6PRO:PR:Q9SUG6
PROSITE:PS50033PROSITE:PS51399ProteinModelPortal:Q9SUG6Proteomes:UP000006548
RefSeq:NP_193946.2SMART:SM00166SMART:SM00553SMR:Q9SUG6
STRING:3702.AT4G22150.1SUPFAM:SSF102848SUPFAM:SSF54236TAIR:AT4G22150
tair10-symbols:PUX3UniGene:At.1965UniProt:F4JL29
Coordinates (TAIR10) chr4:-:11731272..11732800
Molecular Weight (calculated) 40456.80 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.50
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVLFLAKHT RIREHALELT RSVLHALGFR VKALFSVLLF HKFDFLIPNP FPFYSDQSSE KSIGDMSSKD KKLSKPTSGR TGGIRTLSDL NRRSEPDSDS
101: DSDGPQEYFT GGEKSGMLVQ DPTKEPKHDD VDEIFNQARQ LGAVEGPLEH PSSSRSFTGT GRLLSGESVP TALQQPEPVI HNIIFWSNGF TVDDGPLRKL
201: DDPENASFLD SIRKSECPKE LEPVDKRAPV HVNLMRRDEK CPEKEKLKVS FQGVGRTLGG ASSSTASSQS NLTDVAAVQS PLQSLVVDET LPSTSIQLRL
301: ADGTRMVAKF NNHHTVNDIR GFIEFSRPGN PNNYTLQVMG FPPKPLTDPS QTIEQAGLAS SVVIQKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)