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AT4G35410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.930
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Clathrin adaptor complex small chain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: associated protein 19 (TAIR:AT2G17380.1); Has 1701 Blast hits to 1700 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 404; Plants - 247; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5030eggNOG:KOG0934EMBL:CP002687EnsemblPlants:AT4G35410
EnsemblPlants:AT4G35410.1entrez:829694ExpressionAtlas:F4JN08GeneID:829694
GO:GO:0006886GO:GO:0008565GO:GO:0016192GO:GO:0030117
Gramene:AT4G35410.1hmmpanther:PTHR11753hmmpanther:PTHR11753:SF16InterPro:IPR000804
InterPro:IPR011012InterPro:IPR016635InterPro:IPR022775OMA:FCAGLEE
PANTHER:PTHR11753PaxDb:F4JN08Pfam:PF01217PhylomeDB:F4JN08
PIRSF:PIRSF015588PRIDE:F4JN08PROSITE:PS00989ProteinModelPortal:F4JN08
Proteomes:UP000006548RefSeq:NP_849496.1scanprosite:PS00989SMR:F4JN08
STRING:3702.AT4G35410.2SUPFAM:SSF64356TAIR:AT4G35410UniGene:At.2276
UniGene:At.63750UniProt:F4JN08
Coordinates (TAIR10) chr4:+:16832572..16833476
Molecular Weight (calculated) 14797.20 Da
IEP (calculated) 8.79
GRAVY (calculated) 0.00
Length 124 amino acids
Sequence (TAIR10)
(BLAST)
001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKV IACCKHSRTL PFVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)