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AT2G24290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.948
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1068)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT4G30996.1); Has 111 Blast hits to 111 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSREeggNOG:KOG1823EMBL:AC006403EMBL:AF370163
EMBL:AY150492EMBL:CP002685EnsemblPlants:AT2G24290EnsemblPlants:AT2G24290.1
entrez:816965GeneID:816965Gramene:AT2G24290.1hmmpanther:PTHR32254
hmmpanther:PTHR32254:SF4HOGENOM:HOG000240455IntAct:Q9ZQ38InterPro:IPR010471
KEGG:ath:AT2G24290ncoils:CoilOMA:ITFLWERPfam:PF06364
PhylomeDB:Q9ZQ38PIR:H84634Proteomes:UP000006548RefSeq:NP_565567.1
STRING:3702.AT2G24290.1TAIR:AT2G24290TMHMM:TMhelixUniGene:At.13799
UniProt:Q9ZQ38
Coordinates (TAIR10) chr2:+:10338779..10339859
Molecular Weight (calculated) 19241.30 Da
IEP (calculated) 6.49
GRAVY (calculated) -0.19
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MARRSGNCMR CLVIFSVVSA LLVCGPALYW KLNKGFVGSA RSTNSICPPC VCDFPPPLSL LQIAPGLANL SITGCGSDDP ELKEEMEKPF VDLLTEELKL
101: QEAVADEHSR HMNVTLAEAK RVASQYQKEA EKCNAATEIC ESARERAQAL LLKERKITFL WERRARQLGW EGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)