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AT3G21100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G51520.2); Has 234 Blast hits to 230 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INQBeggNOG:ENOG410YCDXEMBL:CP002686EnsemblPlants:AT3G21100
EnsemblPlants:AT3G21100.1entrez:821662ExpressionAtlas:F4IWD7Gene3D:3.30.70.330
GeneID:821662GO:GO:0000166GO:GO:0003676Gramene:AT3G21100.1
hmmpanther:PTHR24009hmmpanther:PTHR24009:SF3InterPro:IPR000504InterPro:IPR012677
iPTMnet:F4IWD7PaxDb:F4IWD7Pfam:PF00076Pfscan:PS50102
PRIDE:F4IWD7PROSITE:PS50102ProteinModelPortal:F4IWD7Proteomes:UP000006548
RefSeq:NP_188747.5SMART:SM00360SUPFAM:SSF54928TAIR:AT3G21100
UniGene:At.48687UniProt:F4IWD7
Coordinates (TAIR10) chr3:+:7400426..7401870
Molecular Weight (calculated) 33467.90 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.77
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MGMGDKSNSA SKQIYLTFPA DSSFTDEDVS NYFGNFGPVQ DVRIPYQQKR MFGFVTFLHS ETVRIILARG NPHFICDSRV LVKPYKEKGR ILEKRQQQQL
101: LQQMERGNFS PGSSPSGMDS RDLFDSHLAP RMFSNTQEMM RRKAEQADLQ QAIEFQRRRF LSLQLPDMDS ESFLHHQRSL SIGSPVHFSP RVNQSMLFRS
201: ESTSDEVFEG NGDSGHQSEA TRAFLSDTGH NISQERGYNS HLNKGQETSL ENTLPDSFFA SPSKTGETQH PEFEKENCAT ISVTTENKAA SSLQSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)