AT1G76630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 7905 Blast hits to 5237 proteins in 907 species: Archae - 493; Bacteria - 3636; Metazoa - 1081; Fungi - 415; Plants - 279; Viruses - 0; Other Eukaryotes - 2001 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28759699..28765042 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126825.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||
| Length | 1140 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELEQLKKSV EENPDDSSLQ FELGLYLWDN GGDSEKAAEH FVLSAKSDPN NAVAFKYLGH YYSRVTLDLN RAAKCYQRAV LINPNDSDSG EALCDLFDRQ 0101: GKEILEIAVC RDASEKSPKA FWAFCRLGYI QLHQKKWSEA VQSLQHAIRG YPTMSDLWEA LGLAYQRLGM FTAAIKAYGR AIELDETKIF ALVESANIFL 0201: MLGSYRKGVE LFEQALKISP QNISVLYGLA SGLLSWSKEC INLGAFGWAA SLLEDARKAA KASSELASSM SCIWKLHGDI QLTYARCFPW SGGTENSEFT 0301: LKTFSDSILS WRSICYSAAL SAKASYQRAL HLAPWQANVY TDIAITCDLV SSLSDDSDTS SSWKLPEKMV LGALLLECEN SEFWVALGCM SDNSALKLHA 0401: LIRALHLDVS LAVAWAFMGQ IFRESDEMKF AKQAFDCARS IDPTLALPWA GSADTYARES TSDEAFESCL RAAQISPLAE FQVGLAWLAL LQGNISSPQI 0501: FACIEQAVQR SPYYPEPHNL HGLVCEARHN YHTAIASYRL ALAAMSIYPE SSVKSHAGKV SINLVRSLSK AGRFKESVME CANLKSKGLL DAGGLQIYAF 0601: SLWRTGQNDS ALSVIRDLAD SAITSIQKMP KDFFQSSKIS FIVSAIHSLD QSDRLQSIVA STRSYITSQE EIVAMHYLIA LSKLLKTGAG DFLGYEKGIA 0701: HLSKAIHMYP HSNLIRNLLG YILLAGEGMK DACTASRCCI INVSECANKE GLKSALEVLG GGSVACNVIG NTAPRFSFPT CHCQYLNAPV VVVELQRFLH 0801: QEPSNSSVRY LLILNLVQKA REQRFPRQLC RAIERLISVA LSDETCSKEG EYKKFQLLLC ASEISLQMGN IAESINHARK ASSLSLPSSY LFLGHLQLCR 0901: AYAANGSTKN MQEEYRACLE LKTDSNIGWI CLKLIESQYN LEPDANLLEM SLQECSSQKK NSWKEWMAVY SLARGLDSTG KKDFFSAEEF LAQACSLLNS 1001: ESCLLLCHGA VCMELARQSN DSQFLSLAVK SLSKVQASSL FPLPIVYTLL AQAHGSLGSK EKWEKNLRLE WFCWPPEMRP AEVYFQMHIL ARQSEDRPET 1101: TSGIENYQSP EKWVIRAIHT DPSCRRYWKV LDKLVQHPMS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)