AT1G72560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals. PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PAUSED (PSD); CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 688 Blast hits to 667 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 267; Plants - 76; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27325026..27329467 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111469.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 988 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDLEQAIVI SFETGAVDSA LKSQAVTYCQ QIKETPSICS ICIEKLWFSK LVQVQFWCLQ TLQDVLRVKY GSMSLDEQSY VRKSVFSMAC LEVIDNENAG 101: RVVEGPPFVK NKLAQVLATL IYYEYPLIWS SVFLDFMLHL CKGAVVIDMF CRVLNALDDE LISLDYPRTP EEISVAARVK DAMRQQCVPQ IARAWYDIVS 201: MYKNSDPDLS ATVLDCMRRF VSWIDIGLVA NDAFVPLLFE LILSDGLSEQ VRGAAAGCVL AMVSKRMDPQ SKLPLLQTLQ ISRVFGLVSG DVDSDLVSKV 301: SALLTGYAVE VLECHKRLNS EDTKAVSMDL LNEVLPSVFY VMQKCEVDST FSIVQFLLGY VSTLKGLPAL KEKQLLHITQ ILEVIRIQIC YDPMYRNNLN 401: SLDKTGLEEE DRMSEFRKDL FVLLRTVGRV APEVTQHFIR NSLANAVESS SESNVEEVEA ALSLLYSFGE SMTEEAMKTG SGCLSELIPM LLTTQFPGHS 501: HRLVALVYLE NITRYMKFIQ ENSQYIPNVL GAFLDDRGLH HQNFYVSRRA GYLFMRVVKL LKSKLVPFID KILQNLQDTL SQLTTMNFAS RELTGTEDGS 601: HIFEAIGIII GLEDVPAEKQ SDYLSLLLTP LCQQIEAGLV QAKVASSEDF PVKIANIQFA IVAINALSKG FNERLVTASR PGIGLMFKQT LDVLLRVLIE 701: FPKVEPLRSK VTSFIHRMVD TLGSAVFPYL PKALEQLLAD SEPKEMVGFM VLLNQLICKF NSALHDILEE VYPVVAVRIF NVIPRDGLPS RPGAVTEEMR 801: ELIELQRMLY TFLHVIATHD LSSVFLTPKS RAYLDPMMQL VLNTSCNHKD ITVRKACVQI FIKLIKDWCA EPYSEEKVPG FQNFVIEAFA TNCCLYSVLD 901: KSFNFSDANT HALFGEIITA QKVMYEKFGN TFLMHLMSKS FPSAHIPQDL AEQYCQKLQG NDIRSLKSYY QSLIENLRLQ QNGSHVFR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)