suba logo
AT4G32890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA transcription factor 9
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 9 (GATA9); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 12 (TAIR:AT5G25830.1); Has 1477 Blast hits to 1442 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 587; Plants - 795; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
BioGrid:14710eggNOG:COG5641eggNOG:KOG1601EMBL:AK117169
EMBL:AL031804EMBL:AL161582EMBL:BT008342EMBL:CP002687
EnsemblPlants:AT4G32890EnsemblPlants:AT4G32890.1entrez:829425Gene3D:3.30.50.10
GeneID:829425Genevisible:O82632GO:GO:0000977GO:GO:0001085
GO:GO:0001228GO:GO:0003682GO:GO:0003700GO:GO:0005634
GO:GO:0005667GO:GO:0006366GO:GO:0007623GO:GO:0008270
GO:GO:0009416GO:GO:0030154GO:GO:0045944Gramene:AT4G32890.1
hmmpanther:PTHR10071hmmpanther:PTHR10071:SF197HOGENOM:HOG000238267InParanoid:O82632
InterPro:IPR000679InterPro:IPR013088InterPro:IPR016679KEGG:ath:AT4G32890
OMA:ISGMNARPaxDb:O82632Pfam:O82632Pfam:PF00320
Pfscan:PS50114PhylomeDB:O82632PIR:T05297PIRSF:PIRSF016992
PRO:PR:O82632PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:O82632
Proteomes:UP000006548RefSeq:NP_195015.1scanprosite:PS00344SMART:SM00401
SMR:O82632STRING:3702.AT4G32890.1SUPFAM:SSF57716TAIR:AT4G32890
tair10-symbols:GATA9UniGene:At.2468UniProt:O82632
Coordinates (TAIR10) chr4:+:15875598..15876615
Molecular Weight (calculated) 34348.00 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.66
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKIAPELFL VAGNPDSFVV DDLLDFSNDD GEVDDGLNTL PDSSTLSTGT LTDSSNSSSL FTDGTGFSDL YIPNDDIAEL EWLSNFVEES FAGEDQDKLH
101: LFSGLKNPQT TGSTLTHLIK PEPELDHQFI DIDESNVAVP AKARSKRSRS AASTWASRLL SLADSDETNP KKKQRRVKEQ DFAGDMDVDC GESGGGRRCL
201: HCATEKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA SSPTFVMARH SNSHRKVMEL RRQKEMRDEH LLSQLRCENL LMDIRSNGED FLMHNNTNHV
301: APDFRHLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)