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AT2G42380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Basic-leucine zipper (bZIP) transcription factor family protein
Curator
Summary (TAIR10)
Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.
Computational
Description (TAIR10)
BZIP34; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, flower, carpel; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT3G58120.1); Has 9637 Blast hits to 4324 proteins in 138 species: Archae - 7; Bacteria - 28; Metazoa - 99; Fungi - 257; Plants - 885; Viruses - 11; Other Eukaryotes - 8350 (source: NCBI BLink).
Protein Annotations
BioGrid:4176eggNOG:ENOG410IEBUeggNOG:ENOG410YEVNEMBL:AC005956
EMBL:AF401299EMBL:AY074657EMBL:CP002685EnsemblPlants:AT2G42380
EnsemblPlants:AT2G42380.1EnsemblPlants:AT2G42380.2entrez:818839ExpressionAtlas:F4IN23
GeneID:818839Genevisible:F4IN23GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009555GO:GO:0043565
GO:GO:0045893hmmpanther:PTHR13301hmmpanther:PTHR13301:SF69HOGENOM:HOG000238947
InParanoid:F4IN23IntAct:F4IN23InterPro:IPR004827KEGG:ath:AT2G42380
ncoils:CoilOMA:NDEVQSQPaxDb:F4IN23Pfam:PF00170
Pfam:PF07716PIR:C84853PRIDE:F4IN23PRO:PR:F4IN23
PROSITE:PS00036PROSITE:PS50217ProteinModelPortal:F4IN23Proteomes:UP000006548
RefSeq:NP_565970.2RefSeq:NP_850369.1scanprosite:PS00036SMART:SM00338
SMR:F4IN23STRING:3702.AT2G42380.2SUPFAM:SSF57959TAIR:AT2G42380
tair10-symbols:ATBZIP34tair10-symbols:BZIP34UniGene:At.13371UniProt:F4IN22
UniProt:Q9SLC1
Coordinates (TAIR10) chr2:-:17647205..17648660
Molecular Weight (calculated) 34663.80 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.84
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQLPPKIPN MTQHWPDFSS QKLSPFSTPT ATAVATATTT VQNPSWVDEF LDFSASRRGN HRRSISDSIA FLEAPTVSIE DHQFDRFDDE QFMSMFTDDD
101: NLHSNPSHIN NKNNNVGPTG SSSNTSTPSN SFNDDNKELP PSDHNMNNNI NNNYNDEVQS QCKMEPEDGT ASNNNSGDSS GNRILDPKRV KRILANRQSA
201: QRSRVRKLQY ISELELLSPR VAFLDHQRLL LNVDNSALKQ RIAALSQDKL FKDAHQEALK REIERLRQVY NQQSLTNVEN ANHLSATGAG ATPAVDIKSS
301: VETEQLLNVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)