AT5G10510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AINTEGUMENTA-like 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AINTEGUMENTA-like 6 (AIL6); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AINTEGUMENTA-like 7 (TAIR:AT5G65510.1); Has 34181 Blast hits to 11297 proteins in 411 species: Archae - 14; Bacteria - 43; Metazoa - 1028; Fungi - 1178; Plants - 6969; Viruses - 2; Other Eukaryotes - 24947 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3316036..3320008 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63635.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||
| Length | 569 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEMLRSSDQS QFVSYDASSA ASSSPYLLDN FYGWSNQKPQ EFFKEEAQLA AAASMADSTI LTTFVDPQSH HSQNHIPKLE DFLGDSSSIV RYSDNSQTDT 101: QDSSLTQIYD PRHHHNQTGF YSDHHDFKTM AGFQSAFSTN SGSEVDDSAS IGRTHLAGDY LGHVVESSGP ELGFHGGSTG ALSLGVNVNN NTNHRNDNDN 201: HYRGNNNGER INNNNNNDNE KTDSEKEKAV VAVETSDCSN KKIADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQVYLG GYDKEDKAAR 301: AYDLAALKYW NATATTNFPI TNYSKEVEEM KHMTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA 401: IKFRGINAVT NFEMNRYDVE AIMKSALPIG GAAKRLKLSL EAAASSEQKP ILGHHQLHHF QQQQQQQQLQ LQSSPNHSSI NFALCPNSAV QSQQIIPCGI 501: PFEAAALYHH HQQQQQHQQQ QQQQNFFQHF PANAASDSTG SNNNSNVQGT MGLMAPNPAE FFLWPNQSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)