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AT4G36930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.
Computational
Description (TAIR10)
SPATULA (SPT); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G67110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:15128eggNOG:ENOG410IXJ3eggNOG:ENOG410YQY7EMBL:AF319540
EMBL:AK229267EMBL:AL161590EMBL:BT026462EMBL:CP002687
EMBL:Z99707EnsemblPlants:AT4G36930EnsemblPlants:AT4G36930.1entrez:829847
Gene3D:4.10.280.10GeneID:829847Genevisible:Q9FUA4GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007623
GO:GO:0009409GO:GO:0010114GO:GO:0010154GO:GO:0010187
GO:GO:0048440Gramene:AT4G36930.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF92
HOGENOM:HOG000090429InParanoid:Q9FUA4IntAct:Q9FUA4InterPro:IPR011598
KEGG:ath:AT4G36930ncoils:CoilOMA:NAPEMINPaxDb:Q9FUA4
Pfam:PF00010Pfam:Q9FUA4Pfscan:PS50888PhylomeDB:Q9FUA4
PIR:B85436PRIDE:Q9FUA4PRO:PR:Q9FUA4PROSITE:PS50888
ProteinModelPortal:Q9FUA4Proteomes:UP000006548RefSeq:NP_568010.1SMART:SM00353
SMR:Q9FUA4STRING:3702.AT4G36930.1SUPFAM:SSF47459TAIR:AT4G36930
tair10-symbols:SPTUniGene:At.4639UniProt:Q9FUA4
Coordinates (TAIR10) chr4:+:17414167..17415945
Molecular Weight (calculated) 40299.80 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.65
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)