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AT5G43810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Stabilizer of iron transporter SufD / Polynucleotidyl transferase
Curator
Summary (TAIR10)
Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.
Computational
Description (TAIR10)
ZWILLE (ZLL); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT1G48410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19653eggNOG:ENOG410XP07eggNOG:KOG1041EMBL:AB026651
EMBL:AF154272EMBL:AJ223508EMBL:CP002688EnsemblPlants:AT5G43810
EnsemblPlants:AT5G43810.1EnsemblPlants:AT5G43810.2entrez:834403Gene3D:3.30.420.10
GeneID:834403Genevisible:Q9XGW1GO:GO:0006351GO:GO:0006355
GO:GO:0006417GO:GO:0007275GO:GO:0010586GO:GO:0030529
GO:GO:0031047GO:GO:0035019GO:GO:0035198GO:GO:1902183
Gramene:AT5G43810.1Gramene:AT5G43810.2hmmpanther:PTHR22891hmmpanther:PTHR22891:SF45
HOGENOM:HOG000116043InParanoid:Q9XGW1InterPro:IPR003100InterPro:IPR003165
InterPro:IPR012337InterPro:IPR014811InterPro:IPR032472InterPro:IPR032473
InterPro:IPR032474KEGG:ath:AT5G43810KO:K11593OMA:PTRELMF
PaxDb:Q9XGW1Pfam:PF02170Pfam:PF02171Pfam:PF08699
Pfam:PF16486Pfam:PF16487Pfam:PF16488Pfam:Q9XGW1
Pfscan:PS50821Pfscan:PS50822PhylomeDB:Q9XGW1PIR:T52134
PRIDE:Q9XGW1PRO:PR:Q9XGW1PROSITE:PS50821PROSITE:PS50822
ProteinModelPortal:Q9XGW1Proteomes:UP000006548Reactome:R-ATH-426486Reactome:R-ATH-426496
Reactome:R-ATH-5578749RefSeq:NP_001190464.1RefSeq:NP_199194.1SMART:SM00949
SMART:SM00950SMART:SM01163SMR:Q9XGW1STRING:3702.AT5G43810.1
SUPFAM:SSF101690SUPFAM:SSF53098TAIR:AT5G43810tair10-symbols:AGO10
tair10-symbols:PNHtair10-symbols:ZLLUniGene:At.11438UniProt:Q9XGW1
Coordinates (TAIR10) chr5:+:17611939..17616562
Molecular Weight (calculated) 110874.00 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.41
Length 988 amino acids
Sequence (TAIR10)
(BLAST)
001: MPIRQMKDSS ETHLVIKTQP LKHHNPKTVQ NGKIPPPSPS PVTVTTPATV TQSQASSPSP PSKNRSRRRN RGGRKSDQGD VCMRPSSRPR KPPPPSQTTS
101: SAVSVATAGE IVAVNHQMQM GVRKNSNFAP RPGFGTLGTK CIVKANHFLA DLPTKDLNQY DVTITPEVSS KSVNRAIIAE LVRLYKESDL GRRLPAYDGR
201: KSLYTAGELP FTWKEFSVKI VDEDDGIING PKRERSYKVA IKFVARANMH HLGEFLAGKR ADCPQEAVQI LDIVLRELSV KRFCPVGRSF FSPDIKTPQR
301: LGEGLESWCG FYQSIRPTQM GLSLNIDMAS AAFIEPLPVI EFVAQLLGKD VLSKPLSDSD RVKIKKGLRG VKVEVTHRAN VRRKYRVAGL TTQPTRELMF
401: PVDENCTMKS VIEYFQEMYG FTIQHTHLPC LQVGNQKKAS YLPMEACKIV EGQRYTKRLN EKQITALLKV TCQRPRDREN DILRTVQHNA YDQDPYAKEF
501: GMNISEKLAS VEARILPAPW LKYHENGKEK DCLPQVGQWN MMNKKMINGM TVSRWACVNF SRSVQENVAR GFCNELGQMC EVSGMEFNPE PVIPIYSARP
601: DQVEKALKHV YHTSMNKTKG KELELLLAIL PDNNGSLYGD LKRICETELG LISQCCLTKH VFKISKQYLA NVSLKINVKM GGRNTVLVDA ISCRIPLVSD
701: IPTIIFGADV THPENGEESS PSIAAVVASQ DWPEVTKYAG LVCAQAHRQE LIQDLYKTWQ DPVRGTVSGG MIRDLLISFR KATGQKPLRI IFYRDGVSEG
801: QFYQVLLYEL DAIRKACASL EPNYQPPVTF IVVQKRHHTR LFANNHRDKN STDRSGNILP GTVVDTKICH PTEFDFYLCS HAGIQGTSRP AHYHVLWDEN
901: NFTADGIQSL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR ARFYLEPEIM QDNGSPGKKN TKTTTVGDVG VKPLPALKEN VKRVMFYC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)