AT2G45700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.986 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : sterile alpha motif (SAM) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
sterile alpha motif (SAM) domain-containing protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129), DNA repair metallo-beta-lactamase (InterPro:IPR011084), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT3G26680.3); Has 2157 Blast hits to 2099 proteins in 358 species: Archae - 119; Bacteria - 227; Metazoa - 850; Fungi - 290; Plants - 353; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:18827216..18830505 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80969.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 723 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNTVEDDDD DFQIPPSSQL SIRKPLHPTN ANNISHRPPN KKPRLCRYPG KENVTPPPSP DPDLFCSSST PHCILDCIPS SVDCSLGDFN GPISSLGEED 101: KEDKDDCIKV NREGYLCNSM EARLLKSRIC LGFDSGIHED DEGFVESNSE LDVLINLCSE SEGRSGEFSL GKDDSIQCPL CSMDISSLSE EQRQVHSNTC 201: LDKSYNQPSE QDSLRKCENL SSLIKESIDD PVQLPQLVTD LSPVLKWLRS LGLAKYEDVF IREEIDWDTL QSLTEEDLLS IGITSLGPRK KIVNALSGVR 301: DPFASSAEVQ AQSHCTSGHV TERQRDKSTT RKASEPKKPT ANKLITEFFP GQATEGTKIR TAPKPVAEKS PSDSSSRRAV RRNGNNGKSK VIPHWNCIPG 401: TPFRVDAFKY LTRDCCHWFL THFHLDHYQG LTKSFSHGKI YCSLVTAKLV NMKIGIPWER LQVLDLGQKV NISGIDVTCF DANHCPGSIM ILFEPANGKA 501: VLHTGDFRYS EEMSNWLIGS HISSLILDTT YCNPQYDFPK QEAVIQFVVE AIQAEAFNPK TLFLIGSYTI GKERLFLEVA RVLREKIYIN PAKLKLLECL 601: GFSKDDIQWF TVKEEESHIH VVPLWTLASF KRLKHVANRY TNRYSLIVAF SPTGWTSGKT KKKSPGRRLQ QGTIIRYEVP YSEHSSFTEL KEFVQKVSPE 701: VIIPSVNNDG PDSAAAMVSL LVT |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)