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AT4G20340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription factor TFIIE, alpha subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor TFIIE, alpha subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT1G03280.1); Has 775 Blast hits to 709 proteins in 197 species: Archae - 3; Bacteria - 16; Metazoa - 261; Fungi - 178; Plants - 106; Viruses - 31; Other Eukaryotes - 180 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1675eggNOG:KOG2593EMBL:CP002687EnsemblPlants:AT4G20340
EnsemblPlants:AT4G20340.1entrez:827782Gene3D:3.30.40.10GeneID:827782
GO:GO:0006367GO:GO:0043565Gramene:AT4G20340.1hmmpanther:PTHR13097
hmmpanther:PTHR13097:SF7InParanoid:F4JUV3InterPro:IPR002853InterPro:IPR013083
InterPro:IPR017919InterPro:IPR024550KEGG:ath:AT4G20340KO:K03136
ncoils:CoilOMA:WMSESTVPaxDb:F4JUV3Pfam:PF02002
Pfscan:PS51344PRIDE:F4JUV3PROSITE:PS51344ProteinModelPortal:F4JUV3
Proteomes:UP000006548RefSeq:NP_193767.2SMART:SM00531STRING:3702.AT4G20340.1
SUPFAM:SSF57783TAIR:AT4G20340UniGene:At.32725UniProt:F4JUV3
Coordinates (TAIR10) chr4:+:10985011..10987748
Molecular Weight (calculated) 54578.90 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.90
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKSITVVRK TVVLEPFVKL VRLLVRIFYD NYTPESDNQQ KSVKNVKGSA VIVLDALTRR QWVREEDLAK EVKRNAKELR KLIRHFEEQK FVMRYHRKET
101: AKRAKMYSYA VGGTTDGRAE DNVKFHTHSY CCLDYAQIYD IVRYKLHRLK KKFKDELEDR NTVQEYGCPN CKRKYNALDA LRLISMEDDS FHCENCNGEL
201: VMECNKLISE EVVDRGDNAR RRQREKVKVW LQDLEGELKP LMELINRVKD LPFPAFEPFP AWEARAAKAA RENGDFNPDD PSRSLGGYGS TPMPFLGETK
301: VEVNLGEGNE DVTSTGGDSS LKMLPPWMIK QGMKLTEEQR GEMRQEANVD GEAAKLSDDK KSVMENGDDN KDLKDEYLKA YYAAIMEQQK LAAKLNEQES
401: AGESTTTDIE SATTYSDRQV GMKSKREEEE EDVEWEEGAS VAANGNYKVD LNVEAEEAEE KEDGDEDDDI DWEEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)