AT3G05760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2 and C2HC zinc fingers superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); Has 718 Blast hits to 676 proteins in 204 species: Archae - 2; Bacteria - 14; Metazoa - 302; Fungi - 150; Plants - 49; Viruses - 2; Other Eukaryotes - 199 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1707981..1709910 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23436.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.26 | ||||||||||||||||||||||||||||||||
| Length | 202 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSNTTTGV DNTFRKKFDV EEFKERARER EKKESDRSKS RSKGPPVQRA PLKHRDYHVD LESRLGKTQV VTPVAPLSQQ AGYFCRVCDC VVKDSANYLD 101: HINGKKHQRA LGMSMRVERS SLEQVQERFE VLKKRKAPGT FTEQDLDERI RKQQEEEEEL KRQRREKKKE KKKGKVVEEE PEMDPEVAEM MGFGGFGSSK 201: KS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)