AT5G58130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23521190..23523766 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81083.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.51 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||||||
| Length | 748 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEKSSGGGV RLHVGGLGES VGRDDLLKIF SPMGTVDAVE FVRTKGRSFA YIDFSPSSTN SLTKLFSTYN GCVWKGGRLR LEKAKEHYLA RLKREWEAAS 101: STSDNTIKAP SDSPPATHLN IFFPRLRKVK PMPLSGTGKH KYSFQRVPVS SSLPRSFCDC EEHSNSSLTP REIHLHDLEA VNVGRQEAEV NVMNSVMNKL 201: FEKNNVDPEE DNEIEADQDN LIINVASSGN DMDSALDMLS RKRKSILNKK TPSEEGYSEG RKGNLTHPSK NRQTISLEET GRQESSQAIR GKKKPSEVVP 301: DKSSDEPSRT KDLEQSIDNI SWSQKSSWKS LMANGNSNDF SVSSFLPGVG SSKAVQPAPR NTDLAGLPSR ENLKKKTKRK RVTSTIMAED LPVSDDIKRD 401: DSDTMADDIE RDDSDAVEYY TACESMADDT ASDSVAERDD SDAVEDDTAI DSMADDPASD SVAESDDGDA VENDTAIDSM ADDTVSNSMA ESDDGDNVED 501: DTAIDSMCDD TANDDVGSDD SGSLADTVSD TSVEAVPLEF VANTEGDSVD GKSNVEKHEN VAEDLNAEKE SLVVKENVVD EEEAGKGPLK ASNKSTGGSS 601: WLQKASWTQL VSDKNTSSFS ITQLFPDLTS DKGEAAGVIN NVGNQFSNSN QTASAMKQTD YASSSGGFVA AGVPVDSTPV RSLDENRQRL NGKNVSEGAK 701: LGAKKKIIKR KVGSGDTCTF MRSSTSLKEW AKAKKALSEP RRKKNSEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)