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AT4G16900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410J6H3EMBL:CP002687EnsemblPlants:AT4G16900
EnsemblPlants:AT4G16900.1entrez:827399Gene3D:3.40.50.10140Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:827399GO:GO:0007165GO:GO:0043531
Gramene:AT4G16900.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20InParanoid:F4JNB2
InterPro:IPR000157InterPro:IPR002182InterPro:IPR011713InterPro:IPR011991
InterPro:IPR027417InterPro:IPR032675iPTMnet:F4JNB2KEGG:ath:AT4G16900
OMA:WAIEDEAPaxDb:F4JNB2Pfam:PF00931Pfam:PF01582
Pfam:PF07725Pfscan:PS50104PRIDE:F4JNB2PROSITE:PS50104
ProteinModelPortal:F4JNB2Proteomes:UP000006548RefSeq:NP_193424.2SMART:SM00255
SMR:F4JNB2STRING:3702.AT4G16900.1SUPFAM:SSF46785SUPFAM:SSF52058
SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT4G16900UniGene:At.43701
UniProt:F4JNB2
Coordinates (TAIR10) chr4:-:9512329..9516541
Molecular Weight (calculated) 117669.00 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.21
Length 1040 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAAASSSCSR RYDVFPSFSG VDVRKTFLSN LLEAFDRRSI NTFMDHGIER SRTIAPELIS AIREARISIV IFSKNYASST WCLDELVEIH NRLNDWGQLV
0101: ISVFYDVDPS EVRKQTGEFG DVFKKTCEDK EEDQKQRWMQ ALVDITNIAG EDLRNGPSEA AMVVKIANDV SNKLISPSNS FGDFVGIEAH LEAMNSILCL
0201: ESKEARMVGI WGPSGIGKST IGKALYSQLF CQFHFHAFVP HVYSMKSEWE EIFLSKILGK DIKIGGKLGV VEQMLNQKKV LIVLDDVDDP EFLKTLVGET
0301: KWFGPGSRII VITQDMQLLK AHDIDLLYEV KFPSLDLALK MLCRSAFGEN SPPDDFKALA FEVAVLAGNL PLGLSVLGSS LKRRTKEEWM EMMPRFRNGL
0401: NGDIMKTLRV SYDRLHQKDQ DMFLYIACLF NGFEVSYVND LLEDNVGVTM LVEKSLIRIT PDGDIEMHNL LEKLGIEIDR AKSKETVLGI RFCTAFRSKE
0501: LLPIDEKSFQ GMRNLQCLSV TGDYMDLPQS LVYLPPKLRL LDWDRCPLKC LPYSFKADYL IQLTMMGSKL EKLWEGTVPL GSLKRMNMHG SRYLREISDL
0601: SNARNLEELN LSECRSLVTL SSSIQNAIKL IYLDMRGCTK LESFPTHLNL ESLEYLENCI WNKNLPGLDY LACLVRCMPC EFRPNDLVRL IVRGNQMLEK
0701: LWEGVQSLAS LVEMDMSECG NLTEIPDLSK ATNLVNLYLS NCKSLVTVPS TIGNLQKLVR LEMKECTGLE VLPTDVNLSS LKMLDLSGCS SLRTFPLISK
0801: SIKWLYLENT AIEEVPCCIE NFSWLTVLMM YCCKRLKNIS PNIFRLTILK LVDFTECRGV NVAMSDASVE DHSSYIPLYE NIEYTRHRFW ENLNHKHLAC
0901: RAGGVSDKWE GVGHKLGQRE IMRAKLGSPP RAAGRVTVEL EAAGRLSDQL GGYPDGYLGG YGRTGARPKG RVPKTFRGTR THRKYRKLTI KLSSFRENKS
1001: SEEIGSRTVT GKEEEGSDRP NIVKEGKGNL DLESKDSRIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)