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AT5G41150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.978
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Restriction endonuclease, type II-like superfamily protein
Curator
Summary (TAIR10)
Confers resistance to UV radiation. Homolog of the human xeroderma pigmentosum group F DNA repair and yeast Rad1 proteins
Computational
Description (TAIR10)
ULTRAVIOLET HYPERSENSITIVE 1 (UVH1); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166), Restriction endonuclease, type II-like (InterPro:IPR011335), DNA repair nuclease, XPF-type/Helicase (InterPro:IPR020819); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1948eggNOG:KOG0442EMBL:AF089003EMBL:DQ307755
EnsemblPlants:AT5G41150EnsemblPlants:AT5G41150.1entrez:834117ExpressionAtlas:Q2F6I1
Gene3D:3.40.50.10130GeneID:834117GO:GO:0000724GO:GO:0003677
GO:GO:0004518GO:GO:0006259Gramene:AT5G41150.1hmmpanther:PTHR10150
InterPro:IPR006166InterPro:IPR010994InterPro:IPR011335InterPro:IPR020819
ncoils:CoilOMA:QQSIVVDPaxDb:Q2F6I1PaxDb:Q9LKI5
Pfam:PF02732Pfam:Q9LKI5PhylomeDB:Q2F6I1PRIDE:Q2F6I1
ProteinModelPortal:Q2F6I1RefSeq:NP_198931.1SMART:SM00891SMR:Q2F6I1
STRING:3702.AT5G41150.1SUPFAM:SSF47781SUPFAM:SSF52980TAIR:AT5G41150
tair10-symbols:ATRAD1tair10-symbols:RAD1tair10-symbols:UVH1UniGene:At.6598
UniGene:At.71026UniProt:Q2F6I1UniProt:Q9LKI5
Coordinates (TAIR10) chr5:-:16473044..16476919
Molecular Weight (calculated) 107641.00 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.32
Length 956 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKYHQQII SDLLEDSNGG LLILSSGLSL AKLIASLLIL HSPSQGTLLL LLSPAAQSLK SRIIHYISSL DSPTPTEITA DLPANQRYSL YTSGSPFFIT
101: PRILIVDLLT QRIPVSSLAG IFILNAHSIS ETSTEAFIIR IVKSLNSSAY IRAFSDRPQA MVSGFAKTER TMRALFLRKI HLWPRFQLDV SQELEREPPE
201: VVDIRVSMSN YMVGIQKAII EVMDACLKEM KKTNKVDVDD LTVESGLFKS FDEIVRRQLD PIWHTLGKRT KQLVSDLKTL RKLLDYLVRY DAVSFLKFLD
301: TLRVSESYRS VWLFAESSYK IFDFAKKRVY RLVKASDVKS KEHVKNKSGK KRNSKGETDS VEAVGGETAT NVATGVVVEE VLEEAPKWKV LREILEETQE
401: ERLKQAFSEE DNSDNNGIVL VACKDERSCM QLEDCITNNP QKVMREEWEM YLLSKIELRS MQTPQKKKQK TPKGFGILDG VVPVTTIQNS EGSSVGRQEH
501: EALMAAASSI RKLGKTTDMA SGNNNPEPHV DKASCTKGKA KKDPTSLRRS LRSCNKKTTN SKPEILPGPE NEEKANEAST SAPQEANAVR PSGAKKLPPV
601: HFYALESDQP ILDILKPSVI IVYHPDMGFV RELEVYKAEN PLRKLKVYFI FYDESTEVQK FEASIRRENE AFESLIRQKS SMIIPVDQDG LCMGSNSSTE
701: FPASSTQNSL TRKAGGRKEL EKETQVIVDM REFMSSLPNV LHQKGMKIIP VTLEVGDYIL SPSICVERKS IQDLFQSFTS GRLFHQVEMM SRYYRIPVLL
801: IEFSQDKSFS FQSSSDISDD VTPYNIISKL SLLVLHFPRL RLLWSRSLHA TAEIFTTLKS NQDEPDETRA IRVGVPSEEG IIENDIRAEN YNTSAVEFLR
901: RLPGVSDANY RSIMEKCKSL AELASLPVET LAELMGGHKV AKSLREFLDA KYPTLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)