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AT2G40920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box associated domain, type 3 (InterPro:IPR013187), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G40910.1); Has 1328 Blast hits to 1276 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1327; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:AC002409EMBL:AK230399EMBL:BT012563EMBL:CP002685
EnsemblPlants:AT2G40920EnsemblPlants:AT2G40920.1entrez:818689ExpressionAtlas:Q2V414
GeneID:818689hmmpanther:PTHR31111HOGENOM:HOG000112509InParanoid:Q2V414
InterPro:IPR001810InterPro:IPR013187InterPro:IPR017451ncoils:Coil
OMA:CTVAISSPaxDb:Q2V414Pfam:PF00646Pfam:PF08268
Pfam:Q2V414PhylomeDB:Q2V414PIR:T00756PRIDE:Q2V414
PRO:PR:Q2V414ProteinModelPortal:Q2V414Proteomes:UP000006548RefSeq:NP_181624.1
SMART:SM00256STRING:3702.AT2G40920.1SUPFAM:SSF81383TAIR:AT2G40920
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.42895UniProt:Q2V414
Coordinates (TAIR10) chr2:-:17072586..17074012
Molecular Weight (calculated) 49950.00 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.32
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRRRKDLKQ AAESEQEECQ SIAQVVSLGD SDQIQPPPNK KEEEDICEYL LQNFDLDHVM EILMRFPLTS LTRFKCVSKQ WSSLISSRYF CNLLYTTVTR
101: QQPRLYMCLK DDGGHRVLLS ISSPSRGNTS FVVVEQDLSI PGMGGFFLNV VRGLMCFSRR KKARIYNPST KQLLTLPAIK SDIVAQQGQT KHHPRYYIGH
201: DPVSDQYKLV CTVAISSLLP RLGNLKSEHW VFALEAGGSW KKVVPLENYR HHAPSTEGRS TSGSVVRYMA WPDNYNCVVV SFDIRSEQLT IIPVPREIHL
301: DEVVPAVTMM ADLIEYGGKI AIFYHTNLKD EGSADLWVLE DTGKSEWSKK TLVLQPCQRH LVEDIELIVK GTTQDGKVIL APVEMHSRFY ILYYNLQSND
401: LRKVEIKGVP DSWFDKECYF DLNSMDKSES FIYLET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)