AT3G62470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:23106600..23108399 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68565.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.64 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAAPWLHLS RRRSSTQTSL RSFLICSSSF DSDEFISSQS RVIGGRGEEE VRFSGALFSR MIHSSTYHPY RQIPLPHSSV QLLDASLGCR GFSSGSSNVS 101: DGCDEEVESE CDNDEETGVS CVESSTNPEE VERVCKVIDE LFALDRNMEA VLDEMKLDLS HDLIVEVLER FRHARKPAFR FFCWAAERQG FAHDSRTYNS 201: MMSILAKTRQ FETMVSVLEE MGTKGLLTME TFTIAMKAFA AAKERKKAVG IFELMKKYKF KIGVETINCL LDSLGRAKLG KEAQVLFDKL KERFTPNMMT 301: YTVLLNGWCR VRNLIEAARI WNDMIDQGLK PDIVAHNVML EGLLRSRKKS DAIKLFHVMK SKGPCPNVRS YTIMIRDFCK QSSMETAIEY FDDMVDSGLQ 401: PDAAVYTCLI TGFGTQKKLD TVYELLKEMQ EKGHPPDGKT YNALIKLMAN QKMPEHATRI YNKMIQNEIE PSIHTFNMIM KSYFMARNYE MGRAVWEEMI 501: KKGICPDDNS YTVLIRGLIG EGKSREACRY LEEMLDKGMK TPLIDYNKFA ADFHRGGQPE IFEELAQRAK FSGKFAAAEI FARWAQMTRR RFKQRFMED |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)