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AT1G73440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calmodulin-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
calmodulin-related; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G00140.1); Has 2048 Blast hits to 2029 proteins in 336 species: Archae - 0; Bacteria - 7; Metazoa - 605; Fungi - 146; Plants - 781; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYEUeggNOG:ENOG410XYZDEMBL:AC012396EMBL:AF325029
EMBL:CP002684EnsemblPlants:AT1G73440EnsemblPlants:AT1G73440.1entrez:843678
Gene3D:1.10.238.10GeneID:843678GO:GO:0005509Gramene:AT1G73440.1
InterPro:IPR002048InterPro:IPR003903InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT1G73440OMA:DEEFLCKPfam:PF13499Pfscan:PS50222
Pfscan:PS50330PhylomeDB:Q9FDZ8PIR:A96761PROSITE:PS00018
PROSITE:PS50222PROSITE:PS50330Proteomes:UP000006548RefSeq:NP_565064.1
scanprosite:PS00018SMART:SM00054SMR:Q9FDZ8SUPFAM:SSF47473
TAIR:AT1G73440UniGene:At.19144UniProt:Q9FDZ8
Coordinates (TAIR10) chr1:+:27611418..27612182
Molecular Weight (calculated) 28254.90 Da
IEP (calculated) 4.71
GRAVY (calculated) -0.91
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MARGESEGES SGSERESSSS SSGNESEPTK GTISKYEKQR LSRIAENKAR LDALGISKAA KALLSPSPVS KKRRVKRNSG EEDDDYTPVI ADGDGDEDDD
101: EVEEIDEDEE FLCKRKNKSS ASKRKVSSRK ILNTSVSLGE DDDDLDKAIA LSLQGSVAGS DKEAATMKKK RPELMSKTQM TQDELVMYFC QFDEGGKGFI
201: TLRDVAKMAT VHDFTWTEEE LQDMIRCFDM DKDGKLSLDE FRKIVSRCRM LKGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)