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AT2G19270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 930 Blast hits to 533 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HM1eggNOG:KOG3903EMBL:AC003058EMBL:BT024739
EMBL:CP002685EnsemblPlants:AT2G19270EnsemblPlants:AT2G19270.1entrez:816444
GeneID:816444Gramene:AT2G19270.1hmmpanther:PTHR13621HOGENOM:HOG000006430
InterPro:IPR018800KEGG:ath:AT2G19270KO:K13105OMA:GRNDMPA
Pfam:PF10253PhylomeDB:O64560PIR:T01275Proteomes:UP000006548
RefSeq:NP_179517.1STRING:3702.AT2G19270.1TAIR:AT2G19270UniGene:At.39868
UniProt:O64560
Coordinates (TAIR10) chr2:-:8360349..8361907
Molecular Weight (calculated) 39018.10 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.90
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLVASYAS SDEEEDLQPR REAFTVKSSE PSASSLFSAI PQPKELKSSE DGDLGSSSSR GKSSSFLSSL PPPKSSISRK KNPNPSSIPK RVVQIRLPVN
101: PRPSNLDDED DEEEEKARKK RKQMESASAS HDSSVRSFLS AMPAPKSSQT LGALPSLGSG SGRRSNLETE TPSIAFPQTD SGISDQQNQS YESFSHSNSE
201: TEQIVGVDNY YATGYDGGYE TIPSGSSVGY DGSSYGGNTW NGGGFEAMTG LPEAVVAMDS GARRGRRGRN QMPEIVEVKQ DELMKNRPRV DQVKSTGIAF
301: GPAYQPVTSS SKGKVSKLHK RKHQITALFM DMKHKESELT ERRSRGLLTK AETQAKYGW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)