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AT1G03970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : G-box binding factor 4
Curator
Summary (TAIR10)
encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers.
Computational
Description (TAIR10)
G-box binding factor 4 (GBF4); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT5G44080.1); Has 1357 Blast hits to 1357 proteins in 128 species: Archae - 0; Bacteria - 6; Metazoa - 355; Fungi - 8; Plants - 931; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Protein Annotations
BioGrid:24591eggNOG:ENOG410IWGDeggNOG:ENOG410ZKZREMBL:AC003027
EMBL:AY087603EMBL:CP002684EMBL:U01823EnsemblPlants:AT1G03970
EnsemblPlants:AT1G03970.1entrez:839356ExpressionAtlas:P42777GeneID:839356
Genevisible:P42777GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0043565Gramene:AT1G03970.1hmmpanther:PTHR22952
hmmpanther:PTHR22952:SF184HOGENOM:HOG000237278InParanoid:P42777InterPro:IPR004827
iPTMnet:P42777KEGG:ath:AT1G03970KO:K14432ncoils:Coil
OMA:RISFAYGPaxDb:P42777Pfam:P42777Pfam:PF00170
Pfscan:PS50217PhylomeDB:P42777PIR:F86170PRO:PR:P42777
PROSITE:PS00036PROSITE:PS50217ProteinModelPortal:P42777Proteomes:UP000006548
RefSeq:NP_171893.1scanprosite:PS00036SMART:SM00338SMR:P42777
STRING:3702.AT1G03970.1SUPFAM:SSF57959TAIR:AT1G03970tair10-symbols:GBF4
UniGene:At.26664UniGene:At.71149UniProt:P42777UniProt:Q2HIT6
Coordinates (TAIR10) chr1:+:1018237..1019049
Molecular Weight (calculated) 30587.90 Da
IEP (calculated) 5.75
GRAVY (calculated) -0.89
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFKLMSSS NSDLSRRNSS SASSSPSIRS SHHLRPNPHA DHSRISFAYG GGVNDYTFAS DSKPFEMAID VDRSIGDRNS VNNGKSVDDV WKEIVSGEQK
101: TIMMKEEEPE DIMTLEDFLA KAEMDEGASD EIDVKIPTER LNNDGSYTFD FPMQRHSSFQ MVEGSMGGGV TRGKRGRVMM EAMDKAAAQR QKRMIKNRES
201: AARSRERKQA YQVELETLAA KLEEENEQLL KEIEESTKER YKKLMEVLIP VDEKPRPPSR PLSRSHSLEW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)