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AT3G62500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.680
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G61740.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G62500-MONOMEReggNOG:COG2940eggNOG:KOG1080EMBL:AL162507
EMBL:CP002686EnsemblPlants:AT3G62500EnsemblPlants:AT3G62500.1entrez:825424
GeneID:825424GO:GO:0016021Gramene:AT3G62500.1hmmpanther:PTHR15537
hmmpanther:PTHR15537:SF3KEGG:ath:AT3G62500PhylomeDB:Q9LZP0PIR:T48042
Proteomes:UP000006548RefSeq:NP_191809.1STRING:3702.AT3G62500.1TAIR:AT3G62500
TMHMM:TMhelixUniGene:At.49401UniGene:At.73213UniProt:Q9LZP0
Coordinates (TAIR10) chr3:+:23120423..23122222
Molecular Weight (calculated) 42377.90 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.43
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MILKRILTTF DNLNLKRCKI DLEIEYGSQK GEIMVYKKRQ RASVDQPCSR EPGVLTSSSS SLTSREESQQ VCSDQSKSSR GRVRAVPSRF RDSIVGTWKS
101: LKSRKEESTE TCIWGSSKLH RSKDPKLFPR KDNEDSSEVD CDYWDANFGM PKKSDASRKG VYKPEEFTVG DLVWAGCDWM PIGAFVLDSR TSLLTESLSG
201: RLKVPKEGTI ERMLQKYLQL VRPVCDLRTM QTLDARHIEL FLSEGYKDGS WDYNLIGSHK LQKNASAACG AIFDLKHHKE SSSSGILNLK SWTGQPDISQ
301: PKAVIAPHAV AVHTRLRENE VAEIQSVLWH LQESMAALQM MEIGFIVMSV MYGRMGATII YISALRYTFM HLNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)