AT1G08610.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 0.914 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 46651 Blast hits to 12655 proteins in 271 species: Archae - 5; Bacteria - 25; Metazoa - 357; Fungi - 448; Plants - 44319; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:2733788..2735467 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62723.50 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
Length | 559 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASSNLLLEV QFLHIPSLSQ KQANPLSCRK FSSLDWKQEI GLKKDVFFRC HGLLSSVCID NVNDHAERSS EFHHYGVGTN LRARVKPMKQ FGLSSDGPIT 101: ENDEETNNEI LHNLCSNGKL TDACKLVEVM ARHNQVPHFP SCSNLVRGLA RIDQLDKAMC ILRVMVMSGG VPDTITYNMI IGNLCKKGHI RTALVLLEDM 201: SLSGSPPDVI TYNTVIRCMF DYGNAEQAIR FWKDQLQNGC PPFMITYTVL VELVCRYCGS ARAIEVLEDM AVEGCYPDIV TYNSLVNYNC RRGNLEEVAS 301: VIQHILSHGL ELNTVTYNTL LHSLCSHEYW DEVEEILNIM YQTSYCPTVI TYNILINGLC KARLLSRAID FFYQMLEQKC LPDIVTYNTV LGAMSKEGMV 401: DDAIELLGLL KNTCCPPGLI TYNSVIDGLA KKGLMKKALE LYHQMLDAGI FPDDITRRSL IYGFCRANLV EEAGQVLKET SNRGNGIRGS TYRLVIQGLC 501: KKKEIEMAIE VVEIMLTGGC KPDETIYTAI VKGVEEMGMG SEAVQLQKKL KQWKLLKEV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)