suba logo
AT1G08610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 0.914
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 46651 Blast hits to 12655 proteins in 271 species: Archae - 5; Bacteria - 25; Metazoa - 357; Fungi - 448; Plants - 44319; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC003981EMBL:CP002684
EnsemblPlants:AT1G08610EnsemblPlants:AT1G08610.1entrez:837383GeneID:837383
Genevisible:Q9FRS4Gramene:AT1G08610.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF533
HOGENOM:HOG000238342InParanoid:Q9FRS4InterPro:IPR002885KEGG:ath:AT1G08610
OMA:QLRKGCPPaxDb:Q9FRS4Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q9FRS4Pfscan:PS51375PhylomeDB:Q9FRS4
PIR:T00714PRIDE:Q9FRS4PRO:PR:Q9FRS4PROSITE:PS51375
ProteinModelPortal:Q9FRS4Proteomes:UP000006548RefSeq:NP_172337.1SMR:Q9FRS4
STRING:3702.AT1G08610.1TAIR:AT1G08610TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.42258UniProt:Q9FRS4
Coordinates (TAIR10) chr1:-:2733788..2735467
Molecular Weight (calculated) 62723.50 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.05
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSNLLLEV QFLHIPSLSQ KQANPLSCRK FSSLDWKQEI GLKKDVFFRC HGLLSSVCID NVNDHAERSS EFHHYGVGTN LRARVKPMKQ FGLSSDGPIT
101: ENDEETNNEI LHNLCSNGKL TDACKLVEVM ARHNQVPHFP SCSNLVRGLA RIDQLDKAMC ILRVMVMSGG VPDTITYNMI IGNLCKKGHI RTALVLLEDM
201: SLSGSPPDVI TYNTVIRCMF DYGNAEQAIR FWKDQLQNGC PPFMITYTVL VELVCRYCGS ARAIEVLEDM AVEGCYPDIV TYNSLVNYNC RRGNLEEVAS
301: VIQHILSHGL ELNTVTYNTL LHSLCSHEYW DEVEEILNIM YQTSYCPTVI TYNILINGLC KARLLSRAID FFYQMLEQKC LPDIVTYNTV LGAMSKEGMV
401: DDAIELLGLL KNTCCPPGLI TYNSVIDGLA KKGLMKKALE LYHQMLDAGI FPDDITRRSL IYGFCRANLV EEAGQVLKET SNRGNGIRGS TYRLVIQGLC
501: KKKEIEMAIE VVEIMLTGGC KPDETIYTAI VKGVEEMGMG SEAVQLQKKL KQWKLLKEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)