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AT3G52170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA binding; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G58210.4); Has 240 Blast hits to 221 proteins in 88 species: Archae - 6; Bacteria - 92; Metazoa - 40; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0CSeggNOG:ENOG410YU0ZEMBL:AY096650EMBL:CP002686
EnsemblPlants:AT3G52170EnsemblPlants:AT3G52170.1EnsemblPlants:AT3G52170.2entrez:824382
GeneID:824382GO:GO:0003677Gramene:AT3G52170.1Gramene:AT3G52170.2
hmmpanther:PTHR34568hmmpanther:PTHR34568:SF2HOGENOM:HOG000148621KEGG:ath:AT3G52170
OMA:ENNATLNPhylomeDB:Q8L641Proteomes:UP000006548RefSeq:NP_001190069.1
RefSeq:NP_190785.2STRING:3702.AT3G52170.1TAIR:AT3G52170UniGene:At.35319
UniProt:Q8L641
Coordinates (TAIR10) chr3:-:19347039..19349099
Molecular Weight (calculated) 54031.90 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.56
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSLKTTCVG QIFALAKPHD SVGKRTRNRI PKEERKTLVE SFIKKHQKLN NGSFPSLSLT HKEVGGSFYT IREIVREIIQ ENRVLGPGDL LLEGNGSVQD
101: QSLSSSILMD PVPPLSLSPN GFHSGSYQSL DFSSESPEGN VNGSQVCLDN CREVSGSQLL KEDIGLVHQS MDSTDISMTQ LATSCSEDND IKSNAGLQNR
201: METVCDSVDT KPQDKRLDVD NKDEGFEELR FMESDGTKPV NNDDRVNDAG AAMTEIKNGL GTIDMSAETV VETFPLKSVT STMDSPDAQP TELNKVCEGG
301: KGTETEVEAD RSTVNHVDLG EISSSTSSAV LEDIGTEVIV GQIPNHISVP MEKKVGEEIV NSASVDVECA DAKETVVVNG VIGNVHETKE FSNGTLTAEQ
401: KMPTSSTESG SRKNDRAKVD TVSSYAGNEV ASVEKKATME KGKIDAPDSS SSQKENNATL NRIKPESWKG ESNMGRQETN PLLAVLKSFV TAFVKFWSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)