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AT1G72040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21311031 (2011): mitochondrion
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 2859 Blast hits to 2855 proteins in 704 species: Archae - 0; Bacteria - 1629; Metazoa - 493; Fungi - 0; Plants - 69; Viruses - 71; Other Eukaryotes - 597 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G72040-MONOMERBioCyc:MetaCyc:AT1G72040-MONOMEReggNOG:COG1428eggNOG:KOG4235
EMBL:AK228806EMBL:BT022033EMBL:CP002684EnsemblPlants:AT1G72040
EnsemblPlants:AT1G72040.1entrez:843535Gene3D:3.40.50.300GeneID:843535
GO:GO:0005634GO:GO:0009157GO:GO:0019136Gramene:AT1G72040.1
hmmpanther:PTHR10513hmmpanther:PTHR10513:SF24HOGENOM:HOG000238517InterPro:IPR027417
InterPro:IPR031314KEGG:ath:AT1G72040OMA:EKESACGPfam:PF01712
PhylomeDB:Q501D4Proteomes:UP000006548Reactome:R-ATH-73614Reactome:R-ATH-74217
RefSeq:NP_565032.2SMR:Q501D4STRING:3702.AT1G72040.1SUPFAM:SSF52540
TAIR:AT1G72040UniGene:At.48361UniGene:At.69979UniProt:Q501D4
Coordinates (TAIR10) chr1:-:27112159..27114248
Molecular Weight (calculated) 64608.70 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.42
Length 580 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKILCKSTT SSTPVLSTPV NSLAAGFISL GFKTPVKNLP PCSTTKPLST CFFSTSAMPT TTASVSSGGV GFSAYLQRTV HKPAPASVRF STAGYRTCRC
101: SIDGTNRAWV GRTGSWRALF CSDSTGGLTP VNATAGAVVE SEEESDGEDE DEEKDEKPVR MNRRNRSSSG SGEFVGNPDL LKIPGVGLRN QRKLVDNGIG
201: DVAELKKLYK DKFWKASQKM VDYLRSSVGI IHRNHAESIT TFIKESVDDE LKDSGPEPNL NVKKRLTFCV EGNISVGKST FLQRIANETV ELQDLVEIVP
301: EPVDKWQDVG PDHFNILDAF YSEPQRYAYT FQNYVFVTRL MQEKESASGV KPLRLMERSV FSDRMVFVRA VHEAKWMNEM EISIYDSWFD PVVSSLPGLV
401: PDGFIYLRAS PDTCHKRMML RKRAEEGGVS LKYLQDLHEK HESWLLPFES GNHGVLSVSR PSLHMDNSLH PDIKDRVFYL EGNHMHSSIQ KVPALVLDCE
501: PNIDFSRDIE AKTQYARQVA EFFEFVKKKQ ETSTEKSNSQ SPVLLPHQNG GLWMGPAGNH VPGLDLPPLD LKSLLTRPSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)