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AT5G56370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.709
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56420.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JMIDeggNOG:ENOG410Z7P5EMBL:AB009049EMBL:AK176192
EMBL:BT012557EMBL:CP002688EnsemblPlants:AT5G56370EnsemblPlants:AT5G56370.1
EnsemblPlants:AT5G56370.2entrez:835738Gene3D:3.80.10.10GeneID:835738
Genevisible:Q9FM94Gramene:AT5G56370.1Gramene:AT5G56370.2hmmpanther:PTHR32212
hmmpanther:PTHR32212:SF68HOGENOM:HOG000220924InParanoid:Q9FM94InterPro:IPR001810
InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675iPTMnet:Q9FM94
KEGG:ath:AT5G56370OMA:RGSAECEPaxDb:Q9FM94Pfam:PF00646
Pfam:PF07723Pfam:PF08387Pfam:Q9FM94Pfscan:PS50181
PhylomeDB:Q9FM94PRIDE:Q9FM94PRO:PR:Q9FM94PROSITE:PS50181
ProteinModelPortal:Q9FM94Proteomes:UP000006548RefSeq:NP_200448.1RefSeq:NP_974942.1
SMART:SM00256SMART:SM00579SMR:Q9FM94STRING:3702.AT5G56370.1
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT5G56370UniGene:At.29392
UniProt:Q9FM94
Coordinates (TAIR10) chr5:-:22836200..22837619
Molecular Weight (calculated) 48251.20 Da
IEP (calculated) 6.29
GRAVY (calculated) 0.06
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSISLLPDD FLLRILSLLP TKDVLNTSVL SKRWRYLWKL VPKLQYSLID KNADHGTFVR FVDRSLLLSM APVLESLHLK LGRQCSEVDI GFWVRIAVEK
101: GLCELDFDYE HYKTEPCRLP QSLFTCGTLT VLKLKNVSLK DVQFPVCFKL LKTLHLEYVI FLDKETPQKL LSSCPILEVF DLTRDDDDVD NVMSFSVMVP
201: SLQRFIYCGG SGAELVMNTP SLKYLKLSGC GYECMIGNLP EIVEAHVEVA CSTDDILTSL ASVKRLLLCL PTEPELPTGT IFHQLEHLEF CSCCTEWDIL
301: MFMLKHSPKL RSLKLNETHG YTIVSQSDPM FHWEEPSSVP ETLMFVLETL EWRNYRGLKM ENELASFLLK HSRRLKIATF SPADCKQVRI ELRTTVGMKY
401: RILMELARLP RGSAECELVF G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)