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AT3G18270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene
Curator
Summary (TAIR10)
a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model.
Computational
Description (TAIR10)
cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (CYP77A5P); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mandelate racemase/muconate lactonizing enzyme, N-terminal (InterPro:IPR013341), Mandelate racemase/muconate lactonizing enzyme (InterPro:IPR001354), Mandelate racemase/muconate lactonizing enzyme, C-terminal (InterPro:IPR013342); BEST Arabidopsis thaliana protein match is: magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (TAIR:AT1G68890.1); Has 7895 Blast hits to 7895 proteins in 1549 species: Archae - 251; Bacteria - 5761; Metazoa - 71; Fungi - 140; Plants - 48; Viruses - 0; Other Eukaryotes - 1624 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4948eggNOG:ENOG410JR37EMBL:AF370323EMBL:AY063111
EnsemblPlants:AT3G18270EnsemblPlants:AT3G18270.1entrez:821355Gene3D:3.20.20.120
Gene3D:3.30.390.10GeneID:821355GO:GO:0003824Gramene:AT3G18270.1
hmmpanther:PTHR13794hmmpanther:PTHR13794:SF13InterPro:IPR001354InterPro:IPR013341
InterPro:IPR013342InterPro:IPR029017InterPro:IPR029065KEGG:ath:AT3G18270
OMA:LAPKNGWPANTHER:PTHR13794Pfam:PF02746Pfam:PF13378
PhylomeDB:Q94K39RefSeq:NP_566605.1SMART:SM00922STRING:3702.AT3G18270.1
SUPFAM:SSF51604SUPFAM:SSF54826TAIR:AT3G18270tair10-symbols:CYP77A5P
UniGene:At.22113UniGene:At.33094UniProt:Q94K39
Coordinates (TAIR10) chr3:+:6262010..6264025
Molecular Weight (calculated) 44664.10 Da
IEP (calculated) 6.19
GRAVY (calculated) 0.04
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSILSSSSS SQLVNSTLNF QNSPKSPITV MSKTSKFKTL TENFTVRVLK AENRELNVAL LSPFTIASSR LDSVSNVAIR IELNDGFVGW GEAPILPSVT
101: AEDQIMAMVK AREASEFLRE LPEMKLGNVL QEIGRFLPGH QFASVRAGME MAMIDAAAKS VRVPLWKLFG GASSTITTDI TIPIVSPAEA SVLASKYRKR
201: GFETLKLKVG KNLKADIEVL QAIRAVHPTC SFILDANEGY QTEEAVKVLE TLHEMKVTPV LFEQPVHRDN WEGLSHVTRT AKNRFGVSIA ADESCRGLTD
301: LKKIIEGNIV DVVNIKLAKT GILESLEVIE LARSSGIELM IGGMVETRLA MGFSGHLAAG LGCFRFIDLD TPLLLADDPV QGGYKACGAV YEFKDEGGHG
401: GYLQWNDVAQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)