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AT1G49350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pfkB-like carbohydrate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); Has 2896 Blast hits to 2893 proteins in 1061 species: Archae - 1; Bacteria - 2475; Metazoa - 103; Fungi - 59; Plants - 64; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0524eggNOG:KOG3009EMBL:AY045816EMBL:AY142514
EMBL:CP002684EnsemblPlants:AT1G49350EnsemblPlants:AT1G49350.1entrez:841358
Gene3D:3.40.1190.20GeneID:841358GO:GO:0004747GO:GO:0006014
Gramene:AT1G49350.1hmmpanther:PTHR10584hmmpanther:PTHR10584:SF188HOGENOM:HOG000030356
InterPro:IPR002139InterPro:IPR002173InterPro:IPR011611InterPro:IPR029056
KEGG:ath:AT1G49350OMA:MSSPENEPfam:PF00294PhylomeDB:Q94AT3
PRINTS:PR00990PROSITE:PS00583Proteomes:UP000006548RefSeq:NP_564543.1
scanprosite:PS00583SMR:Q94AT3STRING:3702.AT1G49350.1SUPFAM:SSF53613
TAIR:AT1G49350UniGene:At.19287UniGene:At.64068UniProt:Q94AT3
Coordinates (TAIR10) chr1:+:18265070..18267034
Molecular Weight (calculated) 40322.30 Da
IEP (calculated) 7.81
GRAVY (calculated) 0.27
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPVIIGALI LDVHAKPSTT PISGTTVPGQ VLFAPGGVAR NVADCIFKLG ITPFMIGTLG LDGPANVLLK EWKLSMKGIL RREDISTPIV SLVYDTNGEV
101: AAGVAGVDAV ENFLTPEWIQ RFEYNISSAR LLMVDANLSS LALEASCKLA AESSVPVWFE PVSVTKSQRI ASIAKYVTIV SPNQDELIAM ANALCAKNLF
201: HPFRSDENKL SIEDMFRALK PAILVLLKNG VKVVIVTLGS NGALLCSKGN PKKALNIDRK FLRSGEVFKR VQSVCSPNRF SELGSNRSPS LFAMHFPTIP
301: AKVKKLTGAG DCLVGGTVAS LSDGLDLIQS LAVGIASAKA AVESDDNVPP EFKLDLISGD AELVYNGAKM LMVHQSML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)