suba logo
AT3G49400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 959 Blast hits to 868 proteins in 197 species: Archae - 0; Bacteria - 241; Metazoa - 222; Fungi - 181; Plants - 154; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ0KeggNOG:ENOG410ZSFEEMBL:CP002686EnsemblPlants:AT3G49400
EnsemblPlants:AT3G49400.1entrez:824102ExpressionAtlas:F4IXX3Gene3D:2.130.10.10
GeneID:824102Gramene:AT3G49400.1hmmpanther:PTHR15496InParanoid:F4IXX3
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR024761
OMA:EVSDRCYPaxDb:F4IXX3Pfam:PF00400Pfam:PF12657
Pfscan:PS50082Pfscan:PS50294PRIDE:F4IXX3PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:F4IXX3Proteomes:UP000006548RefSeq:NP_190509.2
SMART:SM00320SMR:F4IXX3SUPFAM:SSF50978TAIR:AT3G49400
UniGene:At.35611UniProt:F4IXX3
Coordinates (TAIR10) chr3:-:18319249..18324373
Molecular Weight (calculated) 99721.70 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.24
Length 892 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRFQEASL VTSPSYPNAV AWSSENLIAV AAGHLVIIIN PALPTGPRGL ITISDAELYQ IGRVRSQDLL TGGLLPSSLK RERSPCVRSL SWSEIGMSPN
101: HGCLLAVCTA EGRVKLYRPP YSDFCAEWIE IVDISKMLYE NLSSMNFGES KNPSTSLSKD QVVEHDHEED ERISSLKARK RRKTSANNIN LHEKNYTDRA
201: SCSKQDSKAE HNVLEIEVYK QASNGQDRRS LPKALKKCSQ EISPQTYVSR EALLSSHSVA WSSLLRFSSE SSCGNMLRFS LLAIGSKSGS VSIWKVHAPE
301: CYHIERSNVS PMVELTAIVQ THSSWVSTMS WGIFGCDSSN PQVVLVTGSC DGSVKIWMSN KEDLQNSVEV YKSSFFLLKE VVAVNPVQVS TLSFVVSNHY
401: NAMHLAIGKG SGSFEVWKCE ISTRKFEQIV STNAHNQVVT GLAWSYDGRC LYSCSQDNYV RSWILCENAI SEVPIPANTP GLSSTTDLPD DFLSCLGVAL
501: SPGNLAVALV RNFNVELLNP MYQARSQKAA VEFLWNGAQQ SGESEDSTET VTEAILGFSK NEFANWESNI LWSLKEFNYL NKPLVLWDMV AAMLAFKQSM
601: PEFVELVLTK WLSVSYLGFH DDISMEDLVP KITKRFSDVP SRLLHILNVI SRRVMLSELK TEEINRKLQG QRTNDEGEID LWLKLLQESE RELRERLVGL
701: SFSAYLLAES SQGTISPPSW NWRPAGLALL QQWVEINRDI VHSQLETLSL EVKSSRTRSS NSTETALEEE KCPYCAAPVN FHSAEEAFCE SSHQKKKKSK
801: DKERCDESHK LERCCVSMQV CPPTPLWFCK CCNRMTLELA PETLFALPSF PSDLKSLPKS SFSKVASKPF CLFCGVLLQR KQPEFLLSAS PV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)