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AT1G17450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B-block binding subunit of TFIIIC
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-block binding subunit of TFIIIC; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1); Has 94 Blast hits to 81 proteins in 18 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEDGeggNOG:ENOG41100XIEMBL:CP002684EnsemblPlants:AT1G17450
EnsemblPlants:AT1G17450.1entrez:838317ExpressionAtlas:F4I7K0GeneID:838317
Gramene:AT1G17450.1hmmpanther:PTHR15180hmmpanther:PTHR15180:SF1InterPro:IPR007309
iPTMnet:F4I7K0ncoils:CoilPaxDb:F4I7K0Pfam:PF04182
PRIDE:F4I7K0ProteinModelPortal:F4I7K0Proteomes:UP000006548RefSeq:NP_173188.5
TAIR:AT1G17450UniGene:At.41835UniProt:F4I7K0
Coordinates (TAIR10) chr1:-:5988643..5996693
Molecular Weight (calculated) 196321.00 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.49
Length 1753 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSIVCTALE EICCQGNTGI PLVSLWSRLS PPPLSPSVKA HVWRNLLAVP QLQFKAKNTV YEPSDASIQQ LEEALRLDLR IFANEKLRGN FVGLYDAQSN
0101: NTTISAIQRR VLERLAVARA NGVAQNLLAK EFGIEGRNFF YIVKHLESRG LVVKQPAIVR TKEVDGEGDS KTTSCISTNM IYLSRYAKPL GSQQRFEICK
0201: EDSLLEQEAT PAGDSLQSES TKEDTLIKDF LPAMQAICDK LEETNEKVLV VSDIKQDLGY LGSHSRHRAW RSVCRRLTDS HVVEEFDAVV NNKVERCLRL
0301: LKRFSAKDFN YSGKKQLLKF GRSIQKTEQT LELPIDNQIY DMVDAEGSKG LAVMEAESHK KTRVFRVWTS GNAGSECSDR FPEKAENRSW ENNVPINDFG
0401: TPHDTGGLTQ TSIEHSIAIS DADFATPARL TDSENNSGVL HFATPGRLTD SESNSGVPDC SPSDAKRRHV LTRRNLQESF HEICDKVVDT AMGSPDLALS
0501: EMNHLAPPKP AKPKVHQPQP ITVENSRRER RILERLNEEK FVVRAELHKW LLSLEKDRSS KVDRKTIDRI LNRLQEEGLC NCMNISVPNV TNCGRNRSSV
0601: VVFHPSVQSL TRDIVGEIHD RIRSFELGLR GQNLSKRKSN ELIPILNDIQ RGQTNVDLDA RASKSGAMRA NGFVLAKMKS DNLFALEDAF KAMPLELFLQ
0701: VVGSTQKADD MMKKCKQVMR LSELPGEEYK LLMDTLATGR LSMLIDILRR LKMVSSRLRR DEIEEKYANL THAMELKPYI EEPVFVAATS NVMSLDFRPR
0801: IRHDFILSNR DAVDEYWLTL EYCYAAADHR AAKLAFPGSV VQERAKLLKR IAIDEKEKLS FKECEKIAKD LNLTLEQLDF GFKAFSYLVM HVYHAKHGRR
0901: VKSKSKDKHL AIDNSSSSSS GKRKRGTLVK TTGEGVRSII VDGEKVLNSD AIDASNSEKF LNSLEEHQEH NLQENSEIRD LTEDEGQCSS IINQYASSKT
1001: TSTPSQRFSW TDEADRKLLS QYVRHRAALG AKFHGVMWAS VPELPAPPLA CKRRVQILMK NDKFRKAIMS LCNLLSERYA RHLETKQKCL PESNKSHVLV
1101: RYLSPAIGGT DSGSVEQGKD ICFDEEKWDD FNEKSISQAF NDVLELKKMA KLVAPKRTKS SREWSNRDII DEGSEMVPPA IHSEDIQNVS VDQVKDTSRR
1201: SGHYRLHQTV RPLDEKDNDS IQVRKSLAVS TAAELLKLVF LSMPTAPGMP NLLEDTLRRY SERDLFTAYS YLRDKKFLVG GSGGQPFVLS QNFLHSISKS
1301: PFPVNTGTRA AKFSSWLFEH ERDLMAGGVT LTSDLQCGDI LNFFSLVSSG ELSISVSLPE EGVGEPGDRR GLKRRADDIE ESEAESSKKL KLLGEGEINF
1401: RKEKGFPGIA VSVRRATIPT ANAIELFKDD DSRTGEFHLK WGEANSGCDS DDMKELFNST DSTVIPSSLG DSPWQAMASF TSSIMSESTD EEVSLFSPRV
1501: FETVSNALQK AGDQGLSIEE VHSLIDIPSQ ETCDCIVDVL QTFGVALKVN GYNNFRVVHS FYRSKYFLTL EEDGTSQKSQ QSLPVNYLER AVGEHRSKDI
1601: IASSYSTSQD MREHVAGNSV HKVTILNLPE TAQTSGLHEA SIKAPSVTFG TGIEGETKES TSEKSPVPIY PWVNADGSIN KIVFDGLVRR VLGTVMQNPG
1701: IPEDEIINLM DILNPQKASG VDDTRRLYES EGNGANQIHR SSVSVSRSRL NRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)